| Samples | Source | Country of origin | Isolation date |
|---|---|---|---|
| MS0495 | Cheese | Georgia | 03/08/2012 |
| MS0496 | Cheese | Bolivia | 03/08/2012 |
| MS0497 | Cheese | Moldova | 30/08/2012 |
| MS0498 | Meat | Peru | 30/05/2012 |
| MS0499 | Cheese | Peru | 30/05/2012 |
| MS0500 | Poultry | Eq. Guinea | 24/08/2012 |
| MS0501 | Poultry | Eq. Guinea | 24/08/2012 |
| MS0502 | Meat | Bolivia | 16/02/2013 |
| MS0503 | Meat | Bolivia | 16/02/2013 |
| MS0504 | Cheese | Bolivia | 16/02/2013 |
| Field | Description |
|---|---|
| Sample | Name of the sample |
| Reads | Total number of reads after quality filtering |
| AvgReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| AvgContigLen | Average contig length (>200bp) |
| N50 | “Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly” (Miller et al., 2010) |
| GC | GC content (%) of the draft genome |
| Depth | Number of times each nucleotide position in the draft genome has a read that align to that position |
| Specie | Specie identification by Kraken |
| PercentID | Number of reads (%) assigned as that specie by Kraken |
Contig ordering was performed against file: ../Salmonella_references/S_enterica_CT_02021853.fasta
| Sample | Reads | AvgReadLen | Contigs | GenomeLength | AvgContigLen | N50 | GC | Depth | Specie | PercentID |
|---|---|---|---|---|---|---|---|---|---|---|
| MS0495 | 587544 | 259 | 41 | 4650624 | 640249 | 308791 | 52.26 | 32X | Salmonella enterica | 98.25 |
| MS0496 | 888038 | 254 | 107 | 4763977 | 336019 | 136467 | 52.15 | 47X | Salmonella enterica | 94.20 |
| MS0497 | 622536 | 257 | 91 | 4643658 | 438202 | 128141 | 52.29 | 34X | Salmonella enterica | 98.25 |
| MS0498 | 673312 | 260 | 154 | 4757288 | 225116 | 83927 | 52.17 | 36X | Salmonella enterica | 94.55 |
| MS0499 | 828090 | 247 | 115 | 4760115 | 414408 | 99676 | 52.16 | 42X | Salmonella enterica | 94.54 |
| MS0500 | 793160 | 257 | 64 | 4652143 | 439190 | 174151 | 52.15 | 43X | Salmonella enterica | 97.47 |
| MS0501 | 666626 | 261 | 178 | 4560864 | 209922 | 65339 | 52.19 | 38X | Salmonella enterica | 98.87 |
| MS0502 | 692768 | 256 | 73 | 4637517 | 558286 | 204883 | 52.17 | 38X | Salmonella enterica | 97.83 |
| MS0503 | 620020 | 257 | 74 | 4634553 | 408239 | 198288 | 52.17 | 34X | Salmonella enterica | 97.96 |
| MS0504 | 542482 | 262 | 188 | 4709098 | 206809 | 52159 | 52.29 | 30X | Salmonella enterica | 97.80 |
## Warning: package 'bindrcpp' was built under R version 3.4.4
Average number of reads per sample = 691458
Further details can be found in mlst web page.
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| MS0495 | senterica | 4 | aroC(43) | dnaN(41) | hemD(16) | hisD(13) | purE(34) | sucA(13) | thrA(4) |
| MS0496 | senterica | 279 | aroC(62) | dnaN(95) | hemD(54) | hisD(96) | purE(100) | sucA(9) | thrA(100) |
| MS0497 | senterica | 4 | aroC(43) | dnaN(41) | hemD(16) | hisD(13) | purE(34) | sucA(13) | thrA(4) |
| MS0498 | senterica | 279 | aroC(62) | dnaN(95) | hemD(54) | hisD(96) | purE(100) | sucA(9) | thrA(100) |
| MS0499 | senterica | 279 | aroC(62) | dnaN(95) | hemD(54) | hisD(96) | purE(100) | sucA(9) | thrA(100) |
| MS0500 | senterica | 11 | aroC(5) | dnaN(2) | hemD(3) | hisD(7) | purE(6) | sucA(6) | thrA(11) |
| MS0501 | senterica | 23 | aroC(13) | dnaN(11) | hemD(16) | hisD(15) | purE(12) | sucA(15) | thrA(4) |
| MS0502 | senterica | 64 | aroC(10) | dnaN(14) | hemD(15) | hisD(31) | purE(25) | sucA(20) | thrA(33) |
| MS0503 | senterica | 64 | aroC(10) | dnaN(14) | hemD(15) | hisD(31) | purE(25) | sucA(20) | thrA(33) |
| MS0504 | senterica | 45 | aroC(10) | dnaN(7) | hemD(21) | hisD(14) | purE(15) | sucA(12) | thrA(12) |
| Sample | Subspecie | Serovar | Serogroup | H1 | H2 | Quality Control |
|---|---|---|---|---|---|---|
| MS0495 | enterica | Montevideo | C1 | g,m,[p],s | - | PASS |
| MS0496 | enterica | I 4,[5],12:d:- | B | d | - | PASS |
| MS0497 | enterica | Montevideo | C1 | g,m,[p],s | - | PASS |
| MS0498 | enterica | I 4,[5],12:d:- | B | d | - | PASS |
| MS0499 | enterica | I 4,[5],12:d:- | B | d | - | PASS |
| MS0500 | enterica | Enteritidis | D1 | g,m | - | PASS |
| MS0501 | enterica | Oranienburg | C1 | m,t | - | PASS |
| MS0502 | enterica | Anatum | E1 | e,h | 1,6 | PASS |
| MS0503 | enterica | Anatum | E1 | e,h | 1,6 | PASS |
| MS0504 | enterica | Newport | C2-C3 | e,h | 1,2 | PASS |
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 3602 |
| Soft core genes | (95% <= strains < 99%) | 0 |
| Shell genes | (15% <= strains < 95%) | 1607 |
| Cloud genes | (0% <= strains < 15%) | 614 |
| Total genes | (0% <= strains <= 100%) | 5823 |
The search of antibiotic resistance genes was performed by screening of the draft genome against Resfinder (ref), CARD (ref) and ARG-ANNOT (ref) databases by using Abricate. Any hit with coverage and/or identity below 90% was removed.
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (draft genome) and query (antibiotic resistance genes) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_586740 cov_13.4114 | 170029 | 170466 | aac(6’)-Iaa_1 | 0/0 | 100 | 97.9 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_586740 cov_13.4114 | 170028 | 170466 | AAC(6’)-Iy | 0/0 | 100 | 98.4 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_4 length_313823 cov_16.4377 | 103427 | 103892 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_4 length_313823 cov_16.4377 | 99623 | 100829 | mdsA | 0/0 | 100 | 98.4 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_4 length_313823 cov_16.4377 | 96459 | 99627 | mdsB | 0/0 | 100 | 99.0 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_4 length_313823 cov_16.4377 | 94985 | 96443 | mdsC | 0/0 | 100 | 97.9 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_9 length_225727 cov_13.6267 | 5582 | 7006 | mdtK | 0/0 | 100 | 98.6 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_9 length_225727 cov_13.6267 | 53530 | 54253 | sdiA | 0/0 | 100 | 98.5 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_586740 cov_13.4114 | 170029 | 170466 | (AGly)Aac6-Iy | 0/0 | 100 | 98.4 | AF144880:3452-3979 | (AGly)Aac6-Iy |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_311067 cov_18.109 | 12513 | 12950 | aac(6’)-Iaa_1 | 0/0 | 100 | 99.3 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_311067 cov_18.109 | 12512 | 12950 | AAC(6’)-Iaa | 0/0 | 100 | 99.3 | NC_003197:1707358-1707796 | AAC(6’)-Iaa is a chromosomal-encoded aminoglycoside acetyltransferase in S. typhimurium |
| NODE_10 length_157979 cov_23.6405 | 89747 | 90212 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_10 length_157979 cov_23.6405 | 92809 | 94015 | mdsA | 0/0 | 100 | 99.3 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_10 length_157979 cov_23.6405 | 94011 | 97179 | mdsB | 0/0 | 100 | 98.9 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_10 length_157979 cov_23.6405 | 97195 | 98653 | mdsC | 0/0 | 100 | 98.6 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_5 length_238301 cov_19.1003 | 210842 | 212266 | mdtK | 0/0 | 100 | 99.0 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_11 length_136467 cov_17.9726 | 36340 | 37063 | sdiA | 0/0 | 100 | 98.5 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_311067 cov_18.109 | 12513 | 12950 | (AGly)Aac6-Iaa | 0/0 | 100 | 99.3 | NC_003197:1707358-1707795 | (AGly)Aac6-Iaa |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_12 length_115250 cov_14.1838 | 52434 | 52871 | aac(6’)-Iaa_1 | 0/0 | 100 | 97.9 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_12 length_115250 cov_14.1838 | 52434 | 52872 | AAC(6’)-Iy | 0/0 | 100 | 98.4 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_23 length_64776 cov_17.0389 | 22287 | 22752 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_23 length_64776 cov_17.0389 | 25350 | 26556 | mdsA | 0/0 | 100 | 98.4 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_23 length_64776 cov_17.0389 | 26552 | 29720 | mdsB | 0/0 | 100 | 99.0 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_23 length_64776 cov_17.0389 | 29736 | 31194 | mdsC | 0/0 | 100 | 97.9 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_51 length_17197 cov_16.0824 | 10192 | 11616 | mdtK | 0/0 | 100 | 98.6 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_13 length_112638 cov_15.7484 | 75571 | 76294 | sdiA | 0/0 | 100 | 98.5 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_12 length_115250 cov_14.1838 | 52434 | 52871 | (AGly)Aac6-Iy | 0/0 | 100 | 98.4 | AF144880:3452-3979 | (AGly)Aac6-Iy |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_27 length_65470 cov_13.5488 | 52426 | 52863 | aac(6’)-Iaa_1 | 0/0 | 100 | 99.3 | NC_003197 | aac(6’)-Iaa_1 |
| NODE_95 length_2826 cov_1538.31 | 1092 | 1736 | qnrB19_1 | 0/0 | 100 | 100.0 | EU432277 | qnrB19_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_27 length_65470 cov_13.5488 | 52426 | 52864 | AAC(6’)-Iaa | 0/0 | 100 | 99.3 | NC_003197:1707358-1707796 | AAC(6’)-Iaa is a chromosomal-encoded aminoglycoside acetyltransferase in S. typhimurium |
| NODE_4 length_153648 cov_17.5344 | 89707 | 90172 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_4 length_153648 cov_17.5344 | 92769 | 93975 | mdsA | 0/0 | 100 | 99.3 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_4 length_153648 cov_17.5344 | 93971 | 97139 | mdsB | 0/0 | 100 | 98.9 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_4 length_153648 cov_17.5344 | 97155 | 98613 | mdsC | 0/0 | 100 | 98.6 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_15 length_93408 cov_15.3063 | 20276 | 21700 | mdtK | 0/0 | 100 | 99.0 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_95 length_2826 cov_1538.31 | 1056 | 1736 | QnrB5 | 0/0 | 100 | 99.1 | DQ303919:1-682 | QnrB5 is a plasmid-mediated quinolone resistance protein found in Salmonella enterica |
| NODE_9 length_115205 cov_14.3578 | 36324 | 37047 | sdiA | 0/0 | 100 | 98.5 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_27 length_65470 cov_13.5488 | 52426 | 52863 | (AGly)Aac6-Iaa | 0/0 | 100 | 99.3 | NC_003197:1707358-1707795 | (AGly)Aac6-Iaa |
| NODE_95 length_2826 cov_1538.31 | 1056 | 1736 | (Flq)QnrB5 | 0/0 | 100 | 99.1 | DQ303919:1-681 | (Flq)QnrB5 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_5 length_224057 cov_15.0684 | 87858 | 88295 | aac(6’)-Iaa_1 | 0/0 | 100 | 99.3 | NC_003197 | aac(6’)-Iaa_1 |
| NODE_71 length_2826 cov_1536.91 | 1092 | 1736 | qnrB19_1 | 0/0 | 100 | 100.0 | EU432277 | qnrB19_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_5 length_224057 cov_15.0684 | 87857 | 88295 | AAC(6’)-Iaa | 0/0 | 100 | 99.3 | NC_003197:1707358-1707796 | AAC(6’)-Iaa is a chromosomal-encoded aminoglycoside acetyltransferase in S. typhimurium |
| NODE_2 length_403701 cov_18.9992 | 338806 | 339271 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_2 length_403701 cov_18.9992 | 341868 | 343074 | mdsA | 0/0 | 100 | 99.3 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_2 length_403701 cov_18.9992 | 343070 | 346238 | mdsB | 0/0 | 100 | 98.9 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_2 length_403701 cov_18.9992 | 346254 | 347712 | mdsC | 0/0 | 100 | 98.6 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_4 length_236778 cov_16.7821 | 209399 | 210823 | mdtK | 0/0 | 100 | 99.0 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_71 length_2826 cov_1536.91 | 1056 | 1736 | QnrB5 | 0/0 | 100 | 99.1 | DQ303919:1-682 | QnrB5 is a plasmid-mediated quinolone resistance protein found in Salmonella enterica |
| NODE_7 length_162718 cov_15.3676 | 147588 | 148311 | sdiA | 0/0 | 100 | 98.5 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_5 length_224057 cov_15.0684 | 87858 | 88295 | (AGly)Aac6-Iaa | 0/0 | 100 | 99.3 | NC_003197:1707358-1707795 | (AGly)Aac6-Iaa |
| NODE_71 length_2826 cov_1536.91 | 1056 | 1736 | (Flq)QnrB5 | 0/0 | 100 | 99.1 | DQ303919:1-681 | (Flq)QnrB5 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_343106 cov_18.4156 | 51079 | 51516 | aac(6’)-Iaa_1 | 0/0 | 100 | 96.3 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_343106 cov_18.4156 | 51078 | 51516 | AAC(6’)-Iy | 0/0 | 100 | 96.8 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_1 length_439190 cov_21.4436 | 80973 | 81438 | golS | 0/0 | 100 | 99.6 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_1 length_439190 cov_21.4436 | 77170 | 78376 | mdsA | 0/0 | 100 | 98.8 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_1 length_439190 cov_21.4436 | 74006 | 77174 | mdsB | 0/0 | 100 | 99.5 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_1 length_439190 cov_21.4436 | 72532 | 73990 | mdsC | 0/0 | 100 | 98.3 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_22 length_65495 cov_19.9673 | 18811 | 20235 | mdtK | 0/0 | 100 | 98.8 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_11 length_170699 cov_18.423 | 128452 | 129175 | sdiA | 0/0 | 100 | 99.3 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_343106 cov_18.4156 | 51079 | 51516 | (AGly)Aac6-Iy | 0/0 | 100 | 96.8 | AF144880:3452-3979 | (AGly)Aac6-Iy |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_50 length_31448 cov_14.8458 | 15446 | 15883 | aac(6’)-Iaa_1 | 0/0 | 100 | 97.9 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_50 length_31448 cov_14.8458 | 15446 | 15884 | AAC(6’)-Iy | 0/0 | 100 | 98.4 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_19 length_66119 cov_19.6698 | 42035 | 42500 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_19 length_66119 cov_19.6698 | 38232 | 39438 | mdsA | 0/0 | 100 | 98.8 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_19 length_66119 cov_19.6698 | 35068 | 38236 | mdsB | 0/0 | 100 | 99.0 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_19 length_66119 cov_19.6698 | 33594 | 35052 | mdsC | 0/0 | 100 | 98.4 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_79 length_14440 cov_16.116 | 5595 | 7019 | mdtK | 0/0 | 100 | 98.7 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_27 length_54018 cov_17.5413 | 36185 | 36908 | sdiA | 0/0 | 100 | 98.8 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_50 length_31448 cov_14.8458 | 15446 | 15883 | (AGly)Aac6-Iy | 0/0 | 100 | 98.4 | AF144880:3452-3979 | (AGly)Aac6-Iy |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_1 length_558286 cov_14.6997 | 474259 | 474696 | aac(6’)-Iaa_1 | 0/0 | 100 | 99.1 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_1 length_558286 cov_14.6997 | 474259 | 474697 | AAC(6’)-Iy | 0/0 | 100 | 99.5 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_8 length_198416 cov_20.1779 | 89718 | 90183 | golS | 0/0 | 100 | 98.9 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_8 length_198416 cov_20.1779 | 92780 | 93986 | mdsA | 0/0 | 100 | 98.7 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_8 length_198416 cov_20.1779 | 93982 | 97150 | mdsB | 0/0 | 100 | 99.1 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_8 length_198416 cov_20.1779 | 97166 | 98624 | mdsC | 0/0 | 100 | 98.6 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_2 length_395533 cov_15.2345 | 72990 | 74414 | mdtK | 0/0 | 100 | 99.1 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_2 length_395533 cov_15.2345 | 142493 | 143216 | sdiA | 0/0 | 100 | 99.0 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_1 length_558286 cov_14.6997 | 474259 | 474696 | (AGly)Aac6-Iy | 0/0 | 100 | 99.5 | AF144880:3452-3979 | (AGly)Aac6-Iy |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_403085 cov_13.5055 | 175360 | 175797 | aac(6’)-Iaa_1 | 0/0 | 100 | 99.1 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_403085 cov_13.5055 | 175359 | 175797 | AAC(6’)-Iy | 0/0 | 100 | 99.5 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_8 length_198288 cov_17.7731 | 108121 | 108586 | golS | 0/0 | 100 | 98.9 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_8 length_198288 cov_17.7731 | 104318 | 105524 | mdsA | 0/0 | 100 | 98.7 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_8 length_198288 cov_17.7731 | 101154 | 104322 | mdsB | 0/0 | 100 | 99.1 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_8 length_198288 cov_17.7731 | 99680 | 101138 | mdsC | 0/0 | 100 | 98.6 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_27 length_36756 cov_14.8978 | 10551 | 11975 | mdtK | 0/0 | 100 | 99.1 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_10 length_196382 cov_14.5915 | 36337 | 37060 | sdiA | 0/0 | 100 | 99.0 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_403085 cov_13.5055 | 175360 | 175797 | (AGly)Aac6-Iy | 0/0 | 100 | 99.5 | AF144880:3452-3979 | (AGly)Aac6-Iy |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_62 length_27019 cov_12.7387 | 14103 | 14540 | aac(6’)-Iaa_1 | 0/0 | 100 | 99.5 | NC_003197 | aac(6’)-Iaa_1 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_62 length_27019 cov_12.7387 | 14103 | 14541 | AAC(6’)-Iy | 0/0 | 100 | 100.0 | AF144880:3542-3980 | AAC(6’)-Iy is a chromosomal-encoded aminoglycoside acetyltransferase in S. enteritidis and S. enterica. Regulatory mutation required to increase expression of this chromosomally-encoded gene for resistance. In the specific system aminoglycoside resistance was due to a transcriptional fusion secondary to a chromosomal deletion in which the downstream aac(6’)-Iy gene was placed under the control of the upstream nmpC promoter. |
| NODE_32 length_46760 cov_15.3308 | 22637 | 23102 | golS | 0/0 | 100 | 99.4 | NC_003197:400860-401325 | GolS is a regulator activated by the presence of gold and promotes the expression of the MdsABC efflux pump. |
| NODE_32 length_46760 cov_15.3308 | 18834 | 20040 | mdsA | 0/0 | 100 | 98.9 | NC_003197:397057-398263 | MdsA is the membrane fusion protein of the multidrug and metal efflux complex MdsABC. |
| NODE_32 length_46760 cov_15.3308 | 15670 | 18838 | mdsB | 0/0 | 100 | 99.6 | NC_003197:393893-397061 | MdsB is the inner membrane transporter of the multidrug and metal efflux complex MdsABC. |
| NODE_32 length_46760 cov_15.3308 | 14196 | 15654 | mdsC | 0/0 | 100 | 99.5 | NC_003197:392419-393877 | MdsC is the outer membrane channel of the multidrug and metal efflux complex MdsABC. |
| NODE_36 length_43603 cov_13.8252 | 16229 | 17653 | mdtK | 0/0 | 100 | 99.0 | CP014358.1:2161326-2162751 | A multidrug and toxic compound extrusions (MATE) transporter conferring resistance to norfloxacin doxorubicin and acriflavine. |
| NODE_35 length_43892 cov_14.2588 | 26097 | 26820 | sdiA | 0/0 | 100 | 98.8 | NC_003197:2039658-2040381 | SdiA is a cell division regulator that is also a positive regulator of AcrAB only when it’s expressed from a plasmid. When the sdiA gene is on the chromosome it has no effect on expression of acrAB |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_62 length_27019 cov_12.7387 | 14103 | 14540 | (AGly)Aac6-Iy | 0/0 | 100 | 100 | AF144880:3452-3979 | (AGly)Aac6-Iy |
Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample.
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
## [1] "No known mutations from PointFinder database were found. For unknown mutations check point_mutations directory"
The search of virulence genes was performed by screening of the draft genome against Virulence Factors Data Base (VFDB, ref) by using Abricate. Any hit with coverage and/or identity below 90% was removed. To see description of each field, click here.
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_1 length_640249 cov_18.3026 | 372994 | 373536 | bcfA | 0/0 | 100.0 | 98.5 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_640249 cov_18.3026 | 373637 | 374323 | bcfB | 0/0 | 100.0 | 99.4 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_640249 cov_18.3026 | 374328 | 376948 | bcfC | 1/1 | 100.0 | 98.4 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_640249 cov_18.3026 | 376949 | 377956 | bcfD | 0/0 | 100.0 | 97.7 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_640249 cov_18.3026 | 377957 | 378502 | bcfE | 0/0 | 100.0 | 98.0 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_640249 cov_18.3026 | 378518 | 379036 | bcfF | 0/0 | 100.0 | 97.9 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_640249 cov_18.3026 | 379002 | 379733 | bcfG | 0/0 | 100.0 | 97.8 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 546503 | 547312 | cdtB | 0/0 | 100.0 | 99.9 | NP_456275 | (cdtB) cytolethal distending toxin B [CdtB (VF0407)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18] |
| NODE_10 length_155157 cov_14.382 | 70219 | 70674 | csgA | 0/0 | 100.0 | 98.9 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 70716 | 71171 | csgB | 0/0 | 100.0 | 99.3 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 69831 | 70157 | csgC | 0/0 | 100.0 | 99.7 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 71926 | 72576 | csgD | 0/0 | 100.0 | 99.2 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 72581 | 72976 | csgE | 0/0 | 100.0 | 99.5 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 73003 | 73419 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 73446 | 74279 | csgG | 0/0 | 100.0 | 99.3 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_313823 cov_16.4377 | 303273 | 303965 | fimC | 0/0 | 100.0 | 98.7 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_313823 cov_16.4377 | 303996 | 306608 | fimD | 0/0 | 100.0 | 98.8 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_313823 cov_16.4377 | 307640 | 308157 | fimF | 0/0 | 99.8 | 98.5 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_313823 cov_16.4377 | 306623 | 307630 | fimH | 0/0 | 100.0 | 98.4 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_313823 cov_16.4377 | 302696 | 303229 | fimI | 0/0 | 100.0 | 98.1 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 207694 | 209751 | invA | 0/0 | 100.0 | 99.1 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 207263 | 207670 | invB | 0/0 | 100.0 | 99.3 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 205971 | 207266 | invC | 0/0 | 100.0 | 99.1 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 209776 | 210894 | invE | 0/0 | 100.0 | 99.2 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 212576 | 213226 | invF | 0/0 | 100.0 | 98.8 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 210891 | 212579 | invG | 0/0 | 100.0 | 98.9 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 213683 | 214126 | invH | 0/0 | 100.0 | 98.9 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 205550 | 205993 | invI | 0/0 | 100.0 | 99.5 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 204540 | 205550 | invJ | 0/0 | 100.0 | 99.4 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_95766 cov_20.1625 | 44828 | 47554 | mgtB | 0/0 | 100.0 | 98.8 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_95766 cov_20.1625 | 47773 | 48468 | mgtC | 0/0 | 100.0 | 98.4 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 99434 | 100330 | mig-14 | 0/0 | 100.0 | 97.2 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_95766 cov_20.1625 | 38121 | 40973 | misL | 1/15 | 99.5 | 97.7 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 183729 | 184328 | orgA | 0/0 | 100.0 | 99.2 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 183082 | 183772 | orgB | 1/10 | 100.0 | 97.8 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 182633 | 183085 | orgC | 0/0 | 100.0 | 98.5 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 124683 | 125558 | pipB | 0/0 | 100.0 | 98.9 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 185646 | 186824 | prgH | 0/0 | 100.0 | 99.2 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 185379 | 185621 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 185055 | 185360 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 184300 | 185058 | prgK | 0/0 | 100.0 | 99.6 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_243417 cov_15.3434 | 105454 | 112764 | ratB | 5/7 | 100.0 | 91.0 | NP_461449 | (ratB) putative outer membrane protein [RatB (VF0399)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 200192 | 200689 | sicA | 0/0 | 100.0 | 99.4 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 192992 | 193384 | sicP | 0/0 | 100.0 | 99.2 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 573196 | 574206 | sifA | 0/0 | 100.0 | 96.2 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 184693 | 185643 | sifB | 0/0 | 100.0 | 95.6 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_243417 cov_15.3434 | 96387 | 98579 | sinH | 0/0 | 100.0 | 95.9 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 193982 | 196039 | sipA/sspA | 0/0 | 100.0 | 98.3 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 198408 | 200189 | sipB/sspB | 0/0 | 100.0 | 99.5 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 197151 | 198380 | sipC/sspC | 0/0 | 100.0 | 99.4 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 196058 | 197080 | sipD | 3/11 | 99.0 | 90.4 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_260571 cov_14.4785 | 77992 | 80259 | slrP | 2/30 | 98.7 | 94.7 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_126356 cov_13.7393 | 78455 | 80803 | sopA | 0/0 | 100.0 | 97.4 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_155157 cov_14.382 | 122091 | 123776 | sopB/sigD | 0/0 | 100.0 | 98.4 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 256965 | 257918 | sopD | 0/0 | 100.0 | 97.9 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_260571 cov_14.4785 | 217318 | 218277 | sopD2 | 0/0 | 100.0 | 93.2 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_225727 cov_13.6267 | 143223 | 143945 | sopE2 | 0/0 | 100.0 | 97.0 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 203629 | 204540 | spaO | 0/0 | 100.0 | 99.5 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 202965 | 203639 | spaP | 0/0 | 100.0 | 98.8 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 202679 | 202939 | spaQ | 0/0 | 100.0 | 99.6 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 201884 | 202675 | spaR | 0/0 | 100.0 | 99.0 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 200827 | 201897 | spaS | 0/0 | 100.0 | 99.2 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 402072 | 402473 | spiC/ssaB | 0/0 | 100.0 | 99.2 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_551600 cov_18.0739 | 191374 | 193005 | sptP | 0/0 | 100.0 | 97.5 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 400577 | 402070 | ssaC | 0/0 | 100.0 | 98.5 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 399385 | 400596 | ssaD | 0/0 | 100.0 | 98.6 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 399135 | 399377 | ssaE | 0/0 | 100.0 | 98.8 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 392720 | 392935 | ssaG | 0/0 | 100.0 | 100.0 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 392452 | 392679 | ssaH | 0/0 | 100.0 | 99.6 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 392192 | 392440 | ssaI | 0/0 | 100.0 | 98.0 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 391446 | 392195 | ssaJ | 0/0 | 100.0 | 98.1 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 390209 | 390883 | ssaK | 0/0 | 100.0 | 98.8 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 389227 | 390243 | ssaL | 0/0 | 100.0 | 98.9 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 388801 | 389169 | ssaM | 0/0 | 100.0 | 97.3 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 385474 | 386781 | ssaN | 1/6 | 100.0 | 98.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 385094 | 385471 | ssaO | 0/0 | 100.0 | 98.9 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 384739 | 385113 | ssaP | 0/0 | 100.0 | 100.0 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 383790 | 384758 | ssaQ | 0/0 | 100.0 | 98.3 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 383075 | 383722 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 382812 | 383078 | ssaS | 0/0 | 100.0 | 99.6 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 382032 | 382811 | ssaT | 0/0 | 100.0 | 97.6 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 380977 | 382035 | ssaU | 0/0 | 100.0 | 98.2 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 386771 | 388816 | ssaV | 0/0 | 100.0 | 98.9 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 397478 | 397951 | sscA | 0/0 | 100.0 | 97.3 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 394513 | 394947 | sscB | 0/0 | 100.0 | 99.5 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 398545 | 398871 | sseA | 0/0 | 100.0 | 99.4 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 397948 | 398538 | sseB | 0/0 | 100.0 | 97.5 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 396021 | 397475 | sseC | 0/0 | 100.0 | 97.2 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 395418 | 396005 | sseD | 0/0 | 100.0 | 96.8 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 394999 | 395415 | sseE | 0/0 | 100.0 | 99.3 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 393715 | 394497 | sseF | 0/0 | 100.0 | 98.1 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 393029 | 393718 | sseG | 0/0 | 100.0 | 97.7 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 155304 | 156530 | sseJ | 0/0 | 100.0 | 96.7 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_33132 cov_19.4242 | 13694 | 14704 | sseK1 | 0/0 | 100.0 | 98.9 | NP_463026 | (sseK1) type III secretion system effector SseK1 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_154126 cov_14.7001 | 111528 | 112481 | sseL | 0/0 | 100.0 | 96.5 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 207660 | 208292 | steA | 0/0 | 100.0 | 94.2 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 157801 | 158202 | steB | 0/0 | 100.0 | 95.5 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_586740 cov_13.4114 | 77837 | 79210 | steC | 0/0 | 100.0 | 94.9 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_1 length_336019 cov_22.7038 | 187964 | 188872 | avrA | 0/0 | 100.0 | 99.5 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 8084 | 8626 | bcfA | 0/0 | 100.0 | 99.5 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 7297 | 7983 | bcfB | 0/0 | 100.0 | 99.6 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 4671 | 7292 | bcfC | 0/0 | 100.0 | 98.9 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 3663 | 4670 | bcfD | 0/0 | 100.0 | 98.6 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 3117 | 3662 | bcfE | 0/0 | 100.0 | 98.2 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 2583 | 3101 | bcfF | 0/0 | 100.0 | 98.1 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_135220 cov_24.871 | 1886 | 2617 | bcfG | 0/0 | 100.0 | 98.4 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 180763 | 181218 | csgA | 0/0 | 100.0 | 98.7 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 181260 | 181715 | csgB | 0/0 | 100.0 | 100.0 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 180375 | 180701 | csgC | 0/0 | 100.0 | 100.0 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 182470 | 183120 | csgD | 0/0 | 100.0 | 99.2 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 183125 | 183520 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 183547 | 183963 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 183990 | 184823 | csgG | 0/0 | 100.0 | 99.6 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_249088 cov_21.088 | 114373 | 115065 | fimC | 0/0 | 100.0 | 98.7 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_249088 cov_21.088 | 115096 | 117708 | fimD | 0/0 | 100.0 | 98.9 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_249088 cov_21.088 | 118740 | 119258 | fimF | 0/0 | 100.0 | 98.3 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_249088 cov_21.088 | 117723 | 118730 | fimH | 0/0 | 100.0 | 97.9 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_249088 cov_21.088 | 113796 | 114329 | fimI | 0/0 | 100.0 | 99.1 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 158303 | 160360 | invA | 0/0 | 100.0 | 99.6 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 160384 | 160791 | invB | 0/0 | 100.0 | 99.3 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 160788 | 162083 | invC | 0/0 | 100.0 | 99.4 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 157160 | 158278 | invE | 0/0 | 100.0 | 99.7 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 154828 | 155478 | invF | 0/0 | 100.0 | 99.7 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 155475 | 157163 | invG | 0/0 | 100.0 | 99.5 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 153927 | 154370 | invH | 0/0 | 100.0 | 99.3 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 162061 | 162504 | invI | 0/0 | 100.0 | 99.3 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 162504 | 163514 | invJ | 0/0 | 100.0 | 99.3 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_221558 cov_23.7331 | 220921 | 221457 | lpfA | 0/0 | 100.0 | 96.8 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_221558 cov_23.7331 | 220139 | 220837 | lpfB | 0/0 | 100.0 | 98.7 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_221558 cov_23.7331 | 217588 | 220116 | lpfC | 0/0 | 100.0 | 98.5 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_221558 cov_23.7331 | 215973 | 216500 | lpfE | 0/0 | 100.0 | 99.2 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_107805 cov_25.9279 | 42677 | 45403 | mgtB | 0/0 | 100.0 | 98.8 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_107805 cov_25.9279 | 41762 | 42457 | mgtC | 0/0 | 100.0 | 99.0 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 268365 | 269261 | mig-14 | 0/0 | 100.0 | 97.7 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_107805 cov_25.9279 | 49316 | 52183 | misL | 3/30 | 99.5 | 97.4 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 183735 | 184334 | orgA | 0/0 | 100.0 | 99.5 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 184291 | 184981 | orgB | 1/10 | 100.0 | 97.5 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 184978 | 185430 | orgC | 0/0 | 100.0 | 98.0 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_128252 cov_19.1426 | 21371 | 22246 | pipB | 0/0 | 100.0 | 98.7 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 271002 | 272054 | pipB2 | 0/0 | 100.0 | 93.9 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 181239 | 182417 | prgH | 0/0 | 100.0 | 99.3 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 182442 | 182684 | prgI | 0/0 | 100.0 | 98.8 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 182703 | 183008 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 183005 | 183763 | prgK | 0/0 | 100.0 | 99.5 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 167365 | 167862 | sicA | 0/0 | 100.0 | 99.4 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 174679 | 175071 | sicP | 0/0 | 100.0 | 99.5 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_238301 cov_19.1003 | 101991 | 103001 | sifA | 0/0 | 100.0 | 96.1 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 27176 | 28126 | sifB | 0/0 | 100.0 | 95.7 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_242135 cov_21.4062 | 193 | 2385 | sinH | 0/0 | 100.0 | 97.6 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 172024 | 174081 | sipA/sspA | 0/0 | 100.0 | 99.2 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 167865 | 169646 | sipB/sspB | 0/0 | 100.0 | 99.5 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 169674 | 170903 | sipC/sspC | 0/0 | 100.0 | 99.7 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 170974 | 172005 | sipD | 0/0 | 100.0 | 98.7 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_59659 cov_19.1353 | 22818 | 25085 | slrP | 1/30 | 98.7 | 95.3 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_31 length_50067 cov_19.6621 | 22900 | 25248 | sopA | 0/0 | 100.0 | 98.1 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_128252 cov_19.1426 | 18347 | 20032 | sopB/sigD | 0/0 | 100.0 | 97.6 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 109757 | 110710 | sopD | 0/0 | 100.0 | 98.2 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_128252 cov_19.1426 | 97838 | 98797 | sopD2 | 0/0 | 100.0 | 92.6 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_136467 cov_17.9726 | 115585 | 116307 | sopE2 | 0/0 | 100.0 | 96.7 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 163514 | 164425 | spaO | 0/0 | 100.0 | 99.5 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 164415 | 165089 | spaP | 0/0 | 100.0 | 99.4 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 165115 | 165375 | spaQ | 0/0 | 100.0 | 99.2 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 165379 | 166170 | spaR | 0/0 | 100.0 | 99.6 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 166157 | 167227 | spaS | 0/0 | 100.0 | 99.9 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 242392 | 242793 | spiC/ssaB | 0/0 | 100.0 | 99.8 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_336019 cov_22.7038 | 175058 | 176689 | sptP | 0/0 | 100.0 | 98.4 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 240897 | 242390 | ssaC | 0/0 | 100.0 | 98.7 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 239705 | 240916 | ssaD | 0/0 | 100.0 | 98.7 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 239455 | 239697 | ssaE | 0/0 | 100.0 | 98.8 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 233042 | 233257 | ssaG | 0/0 | 100.0 | 99.1 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 232774 | 233001 | ssaH | 0/0 | 100.0 | 99.1 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 232514 | 232762 | ssaI | 0/0 | 100.0 | 98.4 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 231768 | 232517 | ssaJ | 0/0 | 100.0 | 98.5 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 230531 | 231205 | ssaK | 0/0 | 100.0 | 98.8 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 229549 | 230565 | ssaL | 0/0 | 100.0 | 99.0 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 229123 | 229491 | ssaM | 0/0 | 100.0 | 98.6 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 225802 | 227103 | ssaN | 0/0 | 100.0 | 98.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 225422 | 225799 | ssaO | 0/0 | 100.0 | 99.2 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 225067 | 225441 | ssaP | 0/0 | 100.0 | 98.7 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 224118 | 225086 | ssaQ | 0/0 | 100.0 | 98.6 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 223403 | 224050 | ssaR | 0/0 | 100.0 | 99.5 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 223140 | 223406 | ssaS | 0/0 | 100.0 | 100.0 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 222360 | 223139 | ssaT | 0/0 | 100.0 | 98.1 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 221305 | 222363 | ssaU | 0/0 | 100.0 | 97.7 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 227093 | 229138 | ssaV | 0/0 | 100.0 | 99.1 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 237799 | 238272 | sscA | 0/0 | 100.0 | 97.7 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 234834 | 235268 | sscB | 0/0 | 100.0 | 99.8 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 238866 | 239192 | sseA | 0/0 | 100.0 | 98.8 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 238269 | 238859 | sseB | 0/0 | 100.0 | 96.6 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 236342 | 237796 | sseC | 0/0 | 100.0 | 95.7 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 235739 | 236326 | sseD | 0/0 | 100.0 | 95.4 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 235320 | 235736 | sseE | 0/0 | 100.0 | 98.3 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 234036 | 234818 | sseF | 0/0 | 100.0 | 97.8 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 233350 | 234039 | sseG | 0/0 | 100.0 | 97.7 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_19 length_74778 cov_16.2228 | 479 | 1705 | sseJ | 0/0 | 100.0 | 96.4 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_112834 cov_20.1007 | 108117 | 109163 | sseK2 | 0/0 | 100.0 | 99.1 | NP_461081 | (sseK2) type III secretion system effector SseK2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_74720 cov_19.205 | 41687 | 42640 | sseL | 0/0 | 100.0 | 94.8 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 50167 | 50799 | steA | 0/0 | 100.0 | 97.5 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_311067 cov_18.109 | 285 | 686 | steB | 0/0 | 100.0 | 97.0 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_19 length_74778 cov_16.2228 | 73422 | 74777 | steC | 0/0 | 98.7 | 95.8 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_2 length_347102 cov_19.3095 | 163600 | 164142 | bcfA | 0/0 | 100.0 | 98.5 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_347102 cov_19.3095 | 164243 | 164929 | bcfB | 0/0 | 100.0 | 99.4 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_347102 cov_19.3095 | 164934 | 167554 | bcfC | 1/1 | 100.0 | 98.4 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_347102 cov_19.3095 | 167555 | 168562 | bcfD | 0/0 | 100.0 | 97.7 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_347102 cov_19.3095 | 168563 | 169108 | bcfE | 0/0 | 100.0 | 98.0 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_347102 cov_19.3095 | 169124 | 169642 | bcfF | 0/0 | 100.0 | 97.9 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_347102 cov_19.3095 | 169608 | 170339 | bcfG | 0/0 | 100.0 | 97.8 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 218540 | 219349 | cdtB | 0/0 | 100.0 | 99.9 | NP_456275 | (cdtB) cytolethal distending toxin B [CdtB (VF0407)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18] |
| NODE_6 length_184030 cov_15.0903 | 99092 | 99547 | csgA | 0/0 | 100.0 | 98.9 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 99589 | 100044 | csgB | 0/0 | 100.0 | 99.3 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 98704 | 99030 | csgC | 0/0 | 100.0 | 99.7 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 100799 | 101449 | csgD | 0/0 | 100.0 | 99.2 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 101454 | 101849 | csgE | 0/0 | 100.0 | 99.5 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 101876 | 102292 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 102319 | 103152 | csgG | 0/0 | 100.0 | 99.3 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_57551 cov_15.8638 | 9363 | 10055 | fimC | 0/0 | 100.0 | 98.7 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_57551 cov_15.8638 | 6720 | 9332 | fimD | 0/0 | 100.0 | 98.8 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_57551 cov_15.8638 | 5171 | 5688 | fimF | 0/0 | 99.8 | 98.5 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_57551 cov_15.8638 | 5698 | 6705 | fimH | 0/0 | 100.0 | 98.4 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_57551 cov_15.8638 | 10099 | 10632 | fimI | 0/0 | 100.0 | 98.1 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 61127 | 63184 | invA | 0/0 | 100.0 | 99.1 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 63208 | 63615 | invB | 0/0 | 100.0 | 99.3 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 63612 | 64907 | invC | 0/0 | 100.0 | 99.1 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 59984 | 61102 | invE | 0/0 | 100.0 | 99.2 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 57652 | 58302 | invF | 0/0 | 100.0 | 98.8 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 58299 | 59987 | invG | 0/0 | 100.0 | 98.9 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 56752 | 57195 | invH | 0/0 | 100.0 | 98.9 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 64885 | 65328 | invI | 0/0 | 100.0 | 99.5 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 65328 | 66338 | invJ | 0/0 | 100.0 | 99.4 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_31 length_52834 cov_20.0808 | 1896 | 4622 | mgtB | 0/0 | 100.0 | 98.8 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_31 length_52834 cov_20.0808 | 4841 | 5536 | mgtC | 0/0 | 100.0 | 98.4 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 170548 | 171444 | mig-14 | 0/0 | 100.0 | 97.2 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_36 length_38948 cov_20.2166 | 1847 | 4699 | misL | 1/15 | 99.5 | 97.7 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 86550 | 87149 | orgA | 0/0 | 100.0 | 99.2 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 87106 | 87796 | orgB | 1/10 | 100.0 | 97.8 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 87793 | 88245 | orgC | 0/0 | 100.0 | 98.5 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 153556 | 154431 | pipB | 0/0 | 100.0 | 98.9 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 84054 | 85232 | prgH | 0/0 | 100.0 | 99.2 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 85257 | 85499 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 85518 | 85823 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 85820 | 86578 | prgK | 0/0 | 100.0 | 99.6 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_24 length_63246 cov_15.6225 | 55531 | 62841 | ratB | 5/7 | 100.0 | 91.0 | NP_461449 | (ratB) putative outer membrane protein [RatB (VF0399)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 70189 | 70686 | sicA | 0/0 | 100.0 | 99.4 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 77494 | 77886 | sicP | 0/0 | 100.0 | 99.2 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 15304 | 16314 | sifA | 0/0 | 100.0 | 96.2 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_115250 cov_14.1838 | 37257 | 38207 | sifB | 0/0 | 100.0 | 95.6 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_24 length_63246 cov_15.6225 | 46464 | 48656 | sinH | 0/0 | 100.0 | 95.9 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 74839 | 76896 | sipA/sspA | 0/0 | 100.0 | 98.3 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 70689 | 72470 | sipB/sspB | 0/0 | 100.0 | 99.5 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 72498 | 73727 | sipC/sspC | 0/0 | 100.0 | 99.4 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 73798 | 74820 | sipD | 3/11 | 99.0 | 90.4 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_181425 cov_14.6212 | 48247 | 50514 | slrP | 2/30 | 98.7 | 94.7 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_22 length_65103 cov_15.8057 | 45554 | 47902 | sopA | 0/0 | 100.0 | 97.4 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_184030 cov_15.0903 | 150964 | 152649 | sopB/sigD | 0/0 | 100.0 | 98.4 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 12960 | 13913 | sopD | 0/0 | 100.0 | 97.9 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_55 length_10197 cov_16.046 | 3517 | 4476 | sopD2 | 0/0 | 100.0 | 93.2 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_75 length_1199 cov_12.8787 | 405 | 1127 | sopE2 | 0/0 | 100.0 | 97.0 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 66338 | 67249 | spaO | 0/0 | 100.0 | 99.5 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 67239 | 67913 | spaP | 0/0 | 100.0 | 98.8 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 67939 | 68199 | spaQ | 0/0 | 100.0 | 99.6 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 68203 | 68994 | spaR | 0/0 | 100.0 | 99.0 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 68981 | 70051 | spaS | 0/0 | 100.0 | 99.2 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 74109 | 74510 | spiC/ssaB | 0/0 | 100.0 | 99.2 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_188460 cov_18.4717 | 77873 | 79504 | sptP | 0/0 | 100.0 | 97.5 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 72614 | 74107 | ssaC | 0/0 | 100.0 | 98.5 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 71422 | 72633 | ssaD | 0/0 | 100.0 | 98.6 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 71172 | 71414 | ssaE | 0/0 | 100.0 | 98.8 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 64757 | 64972 | ssaG | 0/0 | 100.0 | 100.0 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 64489 | 64716 | ssaH | 0/0 | 100.0 | 99.6 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 64229 | 64477 | ssaI | 0/0 | 100.0 | 98.0 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 63483 | 64232 | ssaJ | 0/0 | 100.0 | 98.1 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 62246 | 62920 | ssaK | 0/0 | 100.0 | 98.8 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 61264 | 62280 | ssaL | 0/0 | 100.0 | 98.9 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 60838 | 61206 | ssaM | 0/0 | 100.0 | 97.3 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 57511 | 58818 | ssaN | 1/6 | 100.0 | 98.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 57131 | 57508 | ssaO | 0/0 | 100.0 | 98.9 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 56776 | 57150 | ssaP | 0/0 | 100.0 | 100.0 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 55827 | 56795 | ssaQ | 0/0 | 100.0 | 98.3 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 55112 | 55759 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 54849 | 55115 | ssaS | 0/0 | 100.0 | 99.6 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 54069 | 54848 | ssaT | 0/0 | 100.0 | 97.6 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 53014 | 54072 | ssaU | 0/0 | 100.0 | 98.2 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 58808 | 60853 | ssaV | 0/0 | 100.0 | 98.9 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 69515 | 69988 | sscA | 0/0 | 100.0 | 97.3 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 66550 | 66984 | sscB | 0/0 | 100.0 | 99.5 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 70582 | 70908 | sseA | 0/0 | 100.0 | 99.4 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 69985 | 70575 | sseB | 0/0 | 100.0 | 97.5 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 68058 | 69512 | sseC | 0/0 | 100.0 | 97.2 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 67455 | 68042 | sseD | 0/0 | 100.0 | 96.8 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 67036 | 67452 | sseE | 0/0 | 100.0 | 99.3 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 65752 | 66534 | sseF | 0/0 | 100.0 | 98.1 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_224730 cov_14.9174 | 65066 | 65755 | sseG | 0/0 | 100.0 | 97.7 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_115250 cov_14.1838 | 66370 | 67596 | sseJ | 0/0 | 100.0 | 96.7 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_49 length_19293 cov_16.0062 | 141 | 1151 | sseK1 | 0/0 | 100.0 | 98.9 | NP_463026 | (sseK1) type III secretion system effector SseK1 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_27 length_59399 cov_15.1793 | 43063 | 44016 | sseL | 0/0 | 100.0 | 96.5 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_115250 cov_14.1838 | 14608 | 15240 | steA | 0/0 | 100.0 | 94.2 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_115250 cov_14.1838 | 64698 | 65099 | steB | 0/0 | 100.0 | 95.5 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_41 length_29783 cov_13.6631 | 28376 | 29749 | steC | 0/0 | 100.0 | 94.9 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_28 length_65386 cov_17.6524 | 62216 | 63124 | avrA | 0/0 | 100.0 | 99.5 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 9987 | 10529 | bcfA | 0/0 | 100.0 | 99.5 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 9200 | 9886 | bcfB | 0/0 | 100.0 | 99.6 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 6574 | 9195 | bcfC | 0/0 | 100.0 | 98.9 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 5566 | 6573 | bcfD | 0/0 | 100.0 | 98.6 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 5020 | 5565 | bcfE | 0/0 | 100.0 | 98.2 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 4486 | 5004 | bcfF | 0/0 | 100.0 | 98.1 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_40 length_38992 cov_17.2665 | 3789 | 4520 | bcfG | 0/0 | 100.0 | 98.4 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_97993 cov_15.5134 | 1063 | 1518 | csgA | 0/0 | 100.0 | 98.7 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_97993 cov_15.5134 | 566 | 1021 | csgB | 0/0 | 100.0 | 100.0 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_97993 cov_15.5134 | 1580 | 1906 | csgC | 0/0 | 100.0 | 100.0 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_84 length_8172 cov_16.6145 | 95 | 745 | csgD | 0/0 | 100.0 | 99.2 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_84 length_8172 cov_16.6145 | 750 | 1145 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_84 length_8172 cov_16.6145 | 1172 | 1588 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_84 length_8172 cov_16.6145 | 1615 | 2448 | csgG | 0/0 | 100.0 | 99.6 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_53 length_28857 cov_15.7158 | 22945 | 23637 | fimC | 0/0 | 100.0 | 98.7 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_53 length_28857 cov_15.7158 | 23668 | 26280 | fimD | 0/0 | 100.0 | 98.9 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_53 length_28857 cov_15.7158 | 27312 | 27830 | fimF | 0/0 | 100.0 | 98.3 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_53 length_28857 cov_15.7158 | 26295 | 27302 | fimH | 0/0 | 100.0 | 97.9 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_53 length_28857 cov_15.7158 | 22368 | 22901 | fimI | 0/0 | 100.0 | 99.1 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 25195 | 27252 | invA | 0/0 | 100.0 | 99.6 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 24764 | 25171 | invB | 0/0 | 100.0 | 99.3 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 23472 | 24767 | invC | 0/0 | 100.0 | 99.4 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 27277 | 28395 | invE | 0/0 | 100.0 | 99.7 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 30077 | 30727 | invF | 0/0 | 100.0 | 99.7 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 28392 | 30080 | invG | 0/0 | 100.0 | 99.5 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 31185 | 31628 | invH | 0/0 | 100.0 | 99.3 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 23051 | 23494 | invI | 0/0 | 100.0 | 99.3 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 22041 | 23051 | invJ | 0/0 | 100.0 | 99.3 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_221410 cov_19.5443 | 86 | 622 | lpfA | 0/0 | 100.0 | 96.8 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_221410 cov_19.5443 | 706 | 1404 | lpfB | 0/0 | 100.0 | 98.7 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_221410 cov_19.5443 | 1427 | 3955 | lpfC | 0/0 | 100.0 | 98.5 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_221410 cov_19.5443 | 5043 | 5570 | lpfE | 0/0 | 100.0 | 99.2 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_107697 cov_21.0948 | 62295 | 65021 | mgtB | 0/0 | 100.0 | 98.8 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_107697 cov_21.0948 | 65241 | 65936 | mgtC | 0/0 | 100.0 | 99.0 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_30 length_59122 cov_17.1178 | 17240 | 18136 | mig-14 | 0/0 | 100.0 | 97.7 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_107697 cov_21.0948 | 55515 | 58382 | misL | 3/30 | 99.5 | 97.4 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 1221 | 1820 | orgA | 0/0 | 100.0 | 99.5 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 574 | 1264 | orgB | 1/10 | 100.0 | 97.5 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 125 | 577 | orgC | 0/0 | 100.0 | 98.0 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_38 length_40142 cov_14.9506 | 27 | 902 | pipB | 0/0 | 100.0 | 98.7 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_30 length_59122 cov_17.1178 | 19877 | 20929 | pipB2 | 0/0 | 100.0 | 93.9 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 3138 | 4316 | prgH | 0/0 | 100.0 | 99.3 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 2871 | 3113 | prgI | 0/0 | 100.0 | 98.8 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 2547 | 2852 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 1792 | 2550 | prgK | 0/0 | 100.0 | 99.5 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 17693 | 18190 | sicA | 0/0 | 100.0 | 99.4 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 10484 | 10876 | sicP | 0/0 | 100.0 | 99.5 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_97993 cov_15.5134 | 79280 | 80290 | sifA | 0/0 | 100.0 | 96.1 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_27 length_65470 cov_13.5488 | 37250 | 38200 | sifB | 0/0 | 100.0 | 95.7 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_31 length_56892 cov_19.3255 | 54570 | 56762 | sinH | 0/0 | 100.0 | 97.6 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 11474 | 13531 | sipA/sspA | 0/0 | 100.0 | 99.2 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 15909 | 17690 | sipB/sspB | 0/0 | 100.0 | 99.5 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 14652 | 15881 | sipC/sspC | 0/0 | 100.0 | 99.7 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 13550 | 14581 | sipD | 0/0 | 100.0 | 98.7 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_29 length_59659 cov_15.7924 | 22818 | 25085 | slrP | 1/30 | 98.7 | 95.3 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_93408 cov_15.3063 | 72591 | 74939 | sopA | 0/0 | 100.0 | 98.1 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_77 length_11117 cov_13.6384 | 1269 | 2954 | sopB/sigD | 0/0 | 100.0 | 97.6 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_149413 cov_18.3288 | 109838 | 110791 | sopD | 0/0 | 100.0 | 98.2 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_37 length_42934 cov_15.5373 | 36233 | 37192 | sopD2 | 0/0 | 100.0 | 92.6 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_24 length_70283 cov_13.578 | 340 | 1062 | sopE2 | 0/0 | 100.0 | 96.7 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 21130 | 22041 | spaO | 0/0 | 100.0 | 99.5 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 20466 | 21140 | spaP | 0/0 | 100.0 | 99.4 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 20180 | 20440 | spaQ | 0/0 | 100.0 | 99.2 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 19385 | 20176 | spaR | 0/0 | 100.0 | 99.6 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 18328 | 19398 | spaS | 0/0 | 100.0 | 99.9 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 20079 | 20480 | spiC/ssaB | 0/0 | 100.0 | 99.8 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_47 length_31672 cov_17.482 | 8866 | 10497 | sptP | 0/0 | 100.0 | 98.4 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 20482 | 21975 | ssaC | 0/0 | 100.0 | 98.7 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 21956 | 23167 | ssaD | 0/0 | 100.0 | 98.7 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 23175 | 23417 | ssaE | 0/0 | 100.0 | 98.8 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 1454 | 1669 | ssaG | 0/0 | 100.0 | 99.1 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 1710 | 1937 | ssaH | 0/0 | 100.0 | 99.1 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 1949 | 2197 | ssaI | 0/0 | 100.0 | 98.4 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 2194 | 2943 | ssaJ | 0/0 | 100.0 | 98.5 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 3506 | 4180 | ssaK | 0/0 | 100.0 | 98.8 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 4146 | 5162 | ssaL | 0/0 | 100.0 | 99.0 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 5220 | 5588 | ssaM | 0/0 | 100.0 | 98.6 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 7608 | 8909 | ssaN | 0/0 | 100.0 | 98.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 8912 | 9289 | ssaO | 0/0 | 100.0 | 99.2 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 9270 | 9644 | ssaP | 0/0 | 100.0 | 98.7 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 9625 | 10593 | ssaQ | 0/0 | 100.0 | 98.6 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 10661 | 11308 | ssaR | 0/0 | 100.0 | 99.5 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 11305 | 11571 | ssaS | 0/0 | 100.0 | 100.0 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 11572 | 12351 | ssaT | 0/0 | 100.0 | 98.1 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 12348 | 13406 | ssaU | 0/0 | 100.0 | 97.7 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 5573 | 7618 | ssaV | 0/0 | 100.0 | 99.1 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 24600 | 25073 | sscA | 0/0 | 100.0 | 97.7 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 27604 | 28038 | sscB | 0/0 | 100.0 | 99.8 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 23680 | 24006 | sseA | 0/0 | 100.0 | 98.8 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 24013 | 24603 | sseB | 0/0 | 100.0 | 96.6 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 25076 | 26530 | sseC | 0/0 | 100.0 | 95.7 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 26546 | 27133 | sseD | 0/0 | 100.0 | 95.4 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_28146 cov_13.2336 | 27136 | 27552 | sseE | 0/0 | 100.0 | 98.3 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_146295 cov_14.287 | 672 | 1361 | sseG | 0/0 | 100.0 | 97.7 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_59 length_25477 cov_12.8437 | 23348 | 24574 | sseJ | 0/0 | 100.0 | 96.4 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_32563 cov_20.8608 | 13692 | 14702 | sseK1 | 0/0 | 100.0 | 99.2 | NP_463026 | (sseK1) type III secretion system effector SseK1 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_81721 cov_15.305 | 77105 | 78151 | sseK2 | 0/0 | 100.0 | 99.1 | NP_461081 | (sseK2) type III secretion system effector SseK2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_27 length_65470 cov_13.5488 | 14577 | 15209 | steA | 0/0 | 100.0 | 97.5 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_27 length_65470 cov_13.5488 | 64690 | 65091 | steB | 0/0 | 100.0 | 97.0 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_24 length_65303 cov_20.364 | 2259 | 3167 | avrA | 0/0 | 100.0 | 99.5 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 121399 | 121941 | bcfA | 0/0 | 100.0 | 99.5 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 122042 | 122728 | bcfB | 0/0 | 100.0 | 99.6 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 122733 | 125354 | bcfC | 0/0 | 100.0 | 98.9 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 125355 | 126362 | bcfD | 0/0 | 100.0 | 98.6 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 126363 | 126908 | bcfE | 0/0 | 100.0 | 98.2 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 126924 | 127442 | bcfF | 0/0 | 100.0 | 98.1 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_161343 cov_21.58 | 127408 | 128139 | bcfG | 0/0 | 100.0 | 98.4 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 179320 | 179775 | csgA | 0/0 | 100.0 | 98.7 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 179817 | 180272 | csgB | 0/0 | 100.0 | 100.0 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 178932 | 179258 | csgC | 0/0 | 100.0 | 100.0 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 181027 | 181677 | csgD | 0/0 | 100.0 | 99.2 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 181682 | 182077 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 182104 | 182520 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 182547 | 183380 | csgG | 0/0 | 100.0 | 99.6 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403701 cov_18.9992 | 134024 | 134716 | fimC | 0/0 | 100.0 | 98.7 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403701 cov_18.9992 | 131381 | 133993 | fimD | 0/0 | 100.0 | 98.9 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403701 cov_18.9992 | 129831 | 130349 | fimF | 0/0 | 100.0 | 98.3 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403701 cov_18.9992 | 130359 | 131366 | fimH | 0/0 | 100.0 | 97.9 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403701 cov_18.9992 | 134760 | 135293 | fimI | 0/0 | 100.0 | 99.1 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 61853 | 63910 | invA | 0/0 | 100.0 | 99.6 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 63934 | 64341 | invB | 0/0 | 100.0 | 99.3 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 64338 | 65633 | invC | 0/0 | 100.0 | 99.4 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 60710 | 61828 | invE | 0/0 | 100.0 | 99.7 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 58378 | 59028 | invF | 0/0 | 100.0 | 99.7 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 59025 | 60713 | invG | 0/0 | 100.0 | 99.5 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 57477 | 57920 | invH | 0/0 | 100.0 | 99.3 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 65611 | 66054 | invI | 0/0 | 100.0 | 99.3 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 66054 | 67064 | invJ | 0/0 | 100.0 | 99.3 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 192952 | 193488 | lpfA | 0/0 | 100.0 | 96.8 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 193572 | 194270 | lpfB | 0/0 | 100.0 | 98.7 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 194293 | 196821 | lpfC | 0/0 | 100.0 | 98.5 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 197909 | 198436 | lpfE | 0/0 | 100.0 | 99.2 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 42586 | 45312 | mgtB | 0/0 | 100.0 | 98.8 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 41671 | 42366 | mgtC | 0/0 | 100.0 | 99.0 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_38 length_34757 cov_18.7664 | 17496 | 18392 | mig-14 | 0/0 | 100.0 | 97.7 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_414408 cov_22.6359 | 49225 | 52092 | misL | 3/30 | 99.5 | 97.4 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 87285 | 87884 | orgA | 0/0 | 100.0 | 99.5 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 87841 | 88531 | orgB | 1/10 | 100.0 | 97.5 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 88528 | 88980 | orgC | 0/0 | 100.0 | 98.0 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_18 length_79532 cov_16.1545 | 39197 | 40072 | pipB | 0/0 | 100.0 | 98.7 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_38 length_34757 cov_18.7664 | 20133 | 21185 | pipB2 | 0/0 | 100.0 | 93.9 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 84789 | 85967 | prgH | 0/0 | 100.0 | 99.3 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 85992 | 86234 | prgI | 0/0 | 100.0 | 98.8 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 86253 | 86558 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 86555 | 87313 | prgK | 0/0 | 100.0 | 99.5 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 70915 | 71412 | sicA | 0/0 | 100.0 | 99.4 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 78229 | 78621 | sicP | 0/0 | 100.0 | 99.5 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_236778 cov_16.7821 | 100548 | 101558 | sifA | 0/0 | 100.0 | 96.1 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_224057 cov_15.0684 | 102521 | 103471 | sifB | 0/0 | 100.0 | 95.7 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_266182 cov_18.7292 | 263900 | 266092 | sinH | 0/0 | 100.0 | 97.6 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 75574 | 77631 | sipA/sspA | 0/0 | 100.0 | 99.2 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 71415 | 73196 | sipB/sspB | 0/0 | 100.0 | 99.5 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 73224 | 74453 | sipC/sspC | 0/0 | 100.0 | 99.7 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 74524 | 75555 | sipD | 0/0 | 100.0 | 98.7 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_59659 cov_16.8412 | 22818 | 25085 | slrP | 1/30 | 98.7 | 95.3 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_32 length_50055 cov_17.0223 | 22753 | 25101 | sopA | 0/0 | 100.0 | 98.1 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_18 length_79532 cov_16.1545 | 41411 | 43096 | sopB/sigD | 0/0 | 100.0 | 97.6 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 13307 | 14260 | sopD | 0/0 | 100.0 | 98.2 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_34 length_42991 cov_17.1474 | 36290 | 37249 | sopD2 | 0/0 | 100.0 | 92.6 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_162718 cov_15.3676 | 68344 | 69066 | sopE2 | 0/0 | 100.0 | 96.7 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 67064 | 67975 | spaO | 0/0 | 100.0 | 99.5 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 67965 | 68639 | spaP | 0/0 | 100.0 | 99.4 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 68665 | 68925 | spaQ | 0/0 | 100.0 | 99.2 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 68929 | 69720 | spaR | 0/0 | 100.0 | 99.6 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 69707 | 70777 | spaS | 0/0 | 100.0 | 99.9 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 7627 | 8028 | spiC/ssaB | 0/0 | 100.0 | 99.8 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_89140 cov_19.6667 | 78608 | 80239 | sptP | 0/0 | 100.0 | 98.4 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 6132 | 7625 | ssaC | 0/0 | 100.0 | 98.7 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 4940 | 6151 | ssaD | 0/0 | 100.0 | 98.7 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 4690 | 4932 | ssaE | 0/0 | 100.0 | 98.8 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 61247 | 61462 | ssaG | 0/0 | 100.0 | 99.1 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 60979 | 61206 | ssaH | 0/0 | 100.0 | 99.1 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 60719 | 60967 | ssaI | 0/0 | 100.0 | 98.4 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 59973 | 60722 | ssaJ | 0/0 | 100.0 | 98.5 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 58736 | 59410 | ssaK | 0/0 | 100.0 | 98.8 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 57754 | 58770 | ssaL | 0/0 | 100.0 | 99.0 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 57328 | 57696 | ssaM | 0/0 | 100.0 | 98.6 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 54007 | 55308 | ssaN | 0/0 | 100.0 | 98.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 53627 | 54004 | ssaO | 0/0 | 100.0 | 99.2 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 53272 | 53646 | ssaP | 0/0 | 100.0 | 98.7 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 52323 | 53291 | ssaQ | 0/0 | 100.0 | 98.6 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 51608 | 52255 | ssaR | 0/0 | 100.0 | 99.5 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 51345 | 51611 | ssaS | 0/0 | 100.0 | 100.0 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 50565 | 51344 | ssaT | 0/0 | 100.0 | 98.1 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 49510 | 50568 | ssaU | 0/0 | 100.0 | 97.7 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 55298 | 57343 | ssaV | 0/0 | 100.0 | 99.1 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 3034 | 3507 | sscA | 0/0 | 100.0 | 97.7 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 69 | 503 | sscB | 0/0 | 100.0 | 99.8 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 4101 | 4427 | sseA | 0/0 | 100.0 | 98.8 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 3504 | 4094 | sseB | 0/0 | 100.0 | 96.6 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 1577 | 3031 | sseC | 0/0 | 100.0 | 95.7 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 974 | 1561 | sseD | 0/0 | 100.0 | 95.4 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_77226 cov_15.7157 | 555 | 971 | sseE | 0/0 | 100.0 | 98.3 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_62916 cov_16.1028 | 61555 | 62244 | sseG | 0/0 | 100.0 | 97.7 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_224057 cov_15.0684 | 73133 | 74359 | sseJ | 0/0 | 100.0 | 96.4 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_54 length_19022 cov_21.3638 | 151 | 1161 | sseK1 | 0/0 | 100.0 | 99.2 | NP_463026 | (sseK1) type III secretion system effector SseK1 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_112967 cov_16.7429 | 108026 | 109072 | sseK2 | 0/0 | 100.0 | 99.1 | NP_461081 | (sseK2) type III secretion system effector SseK2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_224057 cov_15.0684 | 125512 | 126144 | steA | 0/0 | 100.0 | 97.5 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_224057 cov_15.0684 | 75630 | 76031 | steB | 0/0 | 100.0 | 97.0 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_224057 cov_15.0684 | 43 | 1416 | steC | 0/0 | 100.0 | 95.8 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_15 length_144214 cov_21.7517 | 140848 | 141756 | avrA | 0/0 | 100.0 | 99.7 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 134896 | 135438 | bcfA | 0/0 | 100.0 | 99.6 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 135539 | 136225 | bcfB | 0/0 | 100.0 | 99.7 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 136230 | 138851 | bcfC | 0/0 | 100.0 | 99.2 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 138852 | 139859 | bcfD | 0/0 | 100.0 | 99.2 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 139860 | 140405 | bcfE | 0/0 | 100.0 | 98.3 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 140421 | 140939 | bcfF | 0/0 | 100.0 | 99.8 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_174151 cov_23.2331 | 140905 | 141636 | bcfG | 0/0 | 100.0 | 99.3 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_189929 cov_19.4046 | 188521 | 188976 | csgA | 0/0 | 100.0 | 98.9 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_189929 cov_19.4046 | 189018 | 189473 | csgB | 0/0 | 100.0 | 99.6 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_189929 cov_19.4046 | 188133 | 188459 | csgC | 0/0 | 100.0 | 100.0 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_55592 cov_21.612 | 300 | 950 | csgD | 0/0 | 100.0 | 99.7 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_55592 cov_21.612 | 955 | 1350 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_55592 cov_21.612 | 1377 | 1793 | csgF | 0/0 | 100.0 | 100.0 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_55592 cov_21.612 | 1820 | 2653 | csgG | 0/0 | 100.0 | 99.6 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_439190 cov_21.4436 | 285612 | 286304 | fimC | 0/0 | 100.0 | 99.0 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_439190 cov_21.4436 | 286335 | 288947 | fimD | 0/0 | 100.0 | 99.0 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_439190 cov_21.4436 | 289979 | 290497 | fimF | 0/0 | 100.0 | 99.2 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_439190 cov_21.4436 | 288962 | 289969 | fimH | 0/0 | 100.0 | 98.2 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_439190 cov_21.4436 | 285035 | 285568 | fimI | 0/0 | 100.0 | 98.3 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 6562 | 8619 | invA | 0/0 | 100.0 | 99.4 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 8643 | 9050 | invB | 0/0 | 100.0 | 99.0 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 9047 | 10342 | invC | 0/0 | 100.0 | 99.8 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 5419 | 6537 | invE | 0/0 | 100.0 | 99.7 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 3087 | 3737 | invF | 0/0 | 100.0 | 100.0 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 3734 | 5422 | invG | 0/0 | 100.0 | 99.3 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 2188 | 2631 | invH | 0/0 | 100.0 | 98.7 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 10320 | 10763 | invI | 0/0 | 100.0 | 100.0 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 10763 | 11773 | invJ | 0/0 | 100.0 | 99.2 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_228058 cov_24.3475 | 102 | 638 | lpfA | 0/0 | 100.0 | 99.8 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_228058 cov_24.3475 | 723 | 1421 | lpfB | 0/0 | 100.0 | 99.9 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_228058 cov_24.3475 | 1444 | 3972 | lpfC | 0/0 | 100.0 | 99.2 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_228058 cov_24.3475 | 3990 | 5069 | lpfD | 0/0 | 100.0 | 99.6 | NP_462538 | (lpfD) long polar fimbrial protein LpfD [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_5 length_228058 cov_24.3475 | 5075 | 5602 | lpfE | 0/0 | 100.0 | 99.8 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_178040 cov_24.3631 | 132630 | 135356 | mgtB | 0/0 | 100.0 | 99.0 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_178040 cov_24.3631 | 135576 | 136271 | mgtC | 0/0 | 100.0 | 98.6 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_144214 cov_21.7517 | 60674 | 61570 | mig-14 | 0/0 | 100.0 | 98.1 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_178040 cov_24.3631 | 125910 | 128777 | misL | 0/0 | 100.0 | 99.4 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 31996 | 32595 | orgA | 0/0 | 100.0 | 99.8 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 32552 | 33232 | orgB | 0/0 | 100.0 | 99.8 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 33229 | 33681 | orgC | 0/0 | 100.0 | 99.3 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_89962 cov_18.85 | 33424 | 34299 | pipB | 0/0 | 100.0 | 98.6 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_144214 cov_21.7517 | 57880 | 58932 | pipB2 | 0/0 | 100.0 | 99.5 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 29500 | 30678 | prgH | 0/0 | 100.0 | 99.6 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 30703 | 30945 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 30964 | 31269 | prgJ | 0/0 | 100.0 | 99.0 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 31266 | 32024 | prgK | 0/0 | 100.0 | 99.6 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_245609 cov_20.9797 | 106332 | 113639 | ratB | 0/0 | 100.0 | 99.0 | NP_461449 | (ratB) putative outer membrane protein [RatB (VF0399)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 15624 | 16121 | sicA | 0/0 | 100.0 | 99.6 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 22938 | 23330 | sicP | 0/0 | 100.0 | 99.8 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_8 length_189929 cov_19.4046 | 109766 | 110776 | sifA | 0/0 | 100.0 | 99.8 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 65745 | 66695 | sifB | 0/0 | 100.0 | 97.7 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 20283 | 22340 | sipA/sspA | 0/0 | 100.0 | 99.8 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 16124 | 17905 | sipB/sspB | 0/0 | 100.0 | 99.7 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 17933 | 19162 | sipC/sspC | 0/0 | 100.0 | 99.5 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 19233 | 20264 | sipD | 0/0 | 100.0 | 99.8 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_23 length_65031 cov_19.5225 | 33913 | 36167 | slrP | 3/43 | 98.1 | 96.3 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_170699 cov_18.423 | 45563 | 46096 | sodCI | 0/0 | 100.0 | 100.0 | NP_460019 | (sodCI) Gifsy-2 prophage: superoxide dismutase precursor (Cu-Zn) [SodCI (VF0109)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_197194 cov_20.3343 | 194356 | 196704 | sopA | 0/0 | 100.0 | 99.2 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_89962 cov_18.85 | 35205 | 36890 | sopB/sigD | 0/0 | 100.0 | 99.6 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_18 length_109850 cov_22.9478 | 108826 | 109779 | sopD | 0/0 | 100.0 | 98.1 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_163604 cov_19.6098 | 111954 | 112913 | sopD2 | 0/0 | 100.0 | 99.4 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_170699 cov_18.423 | 20092 | 20814 | sopE2 | 0/0 | 100.0 | 99.9 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 11773 | 12684 | spaO | 0/0 | 100.0 | 98.9 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 12674 | 13348 | spaP | 0/0 | 100.0 | 99.0 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 13374 | 13634 | spaQ | 0/0 | 100.0 | 100.0 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 13638 | 14429 | spaR | 0/0 | 100.0 | 99.4 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 14416 | 15486 | spaS | 0/0 | 100.0 | 99.9 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 273831 | 274232 | spiC/ssaB | 0/0 | 100.0 | 99.5 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_33 length_33794 cov_21.3072 | 23317 | 24948 | sptP | 0/0 | 100.0 | 99.6 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 272336 | 273829 | ssaC | 0/0 | 100.0 | 98.9 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 271144 | 272355 | ssaD | 0/0 | 100.0 | 99.5 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 270894 | 271136 | ssaE | 0/0 | 100.0 | 100.0 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 264540 | 264755 | ssaG | 0/0 | 100.0 | 99.5 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 264272 | 264499 | ssaH | 0/0 | 100.0 | 100.0 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 264012 | 264260 | ssaI | 0/0 | 100.0 | 100.0 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 263266 | 264015 | ssaJ | 0/0 | 100.0 | 98.8 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 262029 | 262703 | ssaK | 0/0 | 100.0 | 99.6 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 261047 | 262063 | ssaL | 0/0 | 100.0 | 99.4 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 260621 | 260989 | ssaM | 0/0 | 100.0 | 99.7 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 257300 | 258601 | ssaN | 0/0 | 100.0 | 98.6 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 256920 | 257297 | ssaO | 0/0 | 100.0 | 99.7 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 256565 | 256939 | ssaP | 0/0 | 100.0 | 99.5 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 255616 | 256584 | ssaQ | 0/0 | 100.0 | 98.0 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 254901 | 255548 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 254638 | 254904 | ssaS | 0/0 | 100.0 | 99.6 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 253858 | 254637 | ssaT | 0/0 | 100.0 | 98.8 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 252803 | 253861 | ssaU | 0/0 | 100.0 | 99.2 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 258591 | 260636 | ssaV | 0/0 | 100.0 | 99.8 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 269298 | 269771 | sscA | 0/0 | 100.0 | 99.2 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 266333 | 266767 | sscB | 0/0 | 100.0 | 100.0 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 270365 | 270691 | sseA | 0/0 | 100.0 | 99.7 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 269768 | 270358 | sseB | 0/0 | 100.0 | 100.0 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 267841 | 269295 | sseC | 0/0 | 100.0 | 99.1 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 267238 | 267825 | sseD | 0/0 | 100.0 | 100.0 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 266819 | 267235 | sseE | 0/0 | 100.0 | 99.8 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 265535 | 266317 | sseF | 0/0 | 100.0 | 99.2 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 264849 | 265538 | sseG | 0/0 | 100.0 | 99.4 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_163604 cov_19.6098 | 160554 | 161522 | sseI/srfH | 0/0 | 100.0 | 99.7 | NP_460026 | (sseI/srfH) type III secretion system effector SseI/SrfH cysteine protease [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 31625 | 32851 | sseJ | 0/0 | 100.0 | 99.7 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_155456 cov_20.67 | 41305 | 42258 | sseL | 0/0 | 100.0 | 96.5 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_197194 cov_20.3343 | 4336 | 6702 | sspH2 | 0/0 | 100.0 | 99.7 | NP_461184 | (sspH2) type III secretion system effector SspH2 E3 ubiquitin ligase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 88719 | 89351 | steA | 0/0 | 100.0 | 97.5 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_343106 cov_18.4156 | 34122 | 34522 | steB | 1/1 | 99.8 | 99.8 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_191046 cov_18.0569 | 48393 | 49766 | steC | 0/0 | 100.0 | 99.4 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_65 length_22305 cov_19.0694 | 6804 | 7346 | bcfA | 0/0 | 100.0 | 98.9 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_65 length_22305 cov_19.0694 | 7447 | 8133 | bcfB | 0/0 | 100.0 | 99.8 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_65 length_22305 cov_19.0694 | 8138 | 10759 | bcfC | 0/0 | 100.0 | 98.3 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_65 length_22305 cov_19.0694 | 10760 | 11767 | bcfD | 0/0 | 100.0 | 97.9 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_65 length_22305 cov_19.0694 | 11768 | 12313 | bcfE | 0/0 | 100.0 | 98.5 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_65 length_22305 cov_19.0694 | 12329 | 12847 | bcfF | 0/0 | 100.0 | 98.3 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_65 length_22305 cov_19.0694 | 12813 | 13544 | bcfG | 0/0 | 100.0 | 98.5 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_109 length_3491 cov_10.6106 | 180 | 989 | cdtB | 0/0 | 100.0 | 100.0 | NP_456275 | (cdtB) cytolethal distending toxin B [CdtB (VF0407)] [Salmonella enterica subsp. enterica serovar Typhi str. CT18] |
| NODE_6 length_135378 cov_17.0184 | 101888 | 102343 | csgA | 0/0 | 100.0 | 98.9 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 102385 | 102840 | csgB | 0/0 | 100.0 | 99.3 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 101500 | 101826 | csgC | 0/0 | 100.0 | 99.4 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 103595 | 104245 | csgD | 0/0 | 100.0 | 99.1 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 104250 | 104645 | csgE | 0/0 | 100.0 | 99.5 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 104672 | 105088 | csgF | 0/0 | 100.0 | 100.0 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 105115 | 105948 | csgG | 0/0 | 100.0 | 99.6 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_194862 cov_19.9979 | 15129 | 15821 | fimC | 0/0 | 100.0 | 98.4 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_194862 cov_19.9979 | 12486 | 15098 | fimD | 0/0 | 100.0 | 98.7 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_194862 cov_19.9979 | 10937 | 11454 | fimF | 0/0 | 99.8 | 98.5 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_194862 cov_19.9979 | 11464 | 12471 | fimH | 0/0 | 100.0 | 98.2 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_194862 cov_19.9979 | 15865 | 16398 | fimI | 0/0 | 100.0 | 99.1 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 8044 | 10101 | invA | 0/0 | 100.0 | 99.4 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 10125 | 10532 | invB | 0/0 | 100.0 | 99.3 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 10529 | 11824 | invC | 0/0 | 100.0 | 99.2 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 6901 | 8019 | invE | 0/0 | 100.0 | 99.3 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 4569 | 5219 | invF | 0/0 | 100.0 | 99.5 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 5216 | 6904 | invG | 0/0 | 100.0 | 98.9 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 3669 | 4112 | invH | 0/0 | 100.0 | 98.7 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 11802 | 12245 | invI | 0/0 | 100.0 | 99.5 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 12245 | 13255 | invJ | 0/0 | 100.0 | 98.7 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_54162 cov_23.2666 | 1860 | 4586 | mgtB | 0/0 | 100.0 | 98.7 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_26 length_54162 cov_23.2666 | 4807 | 5502 | mgtC | 0/0 | 100.0 | 98.6 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_98963 cov_19.7083 | 81703 | 82599 | mig-14 | 0/0 | 100.0 | 97.2 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_98 length_6029 cov_19.8197 | 1179 | 4031 | misL | 1/15 | 99.5 | 97.6 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 33467 | 34066 | orgA | 0/0 | 100.0 | 99.5 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 34023 | 34713 | orgB | 1/10 | 100.0 | 98.0 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 34710 | 35162 | orgC | 0/0 | 100.0 | 98.7 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_43 length_36329 cov_17.0979 | 241 | 1116 | pipB | 0/0 | 100.0 | 98.5 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 30971 | 32149 | prgH | 0/0 | 100.0 | 99.2 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 32174 | 32416 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 32435 | 32740 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 32737 | 33495 | prgK | 0/0 | 100.0 | 99.6 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 17106 | 17603 | sicA | 0/0 | 100.0 | 99.4 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 24411 | 24803 | sicP | 0/0 | 100.0 | 99.2 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_135378 cov_17.0184 | 16778 | 17788 | sifA | 0/0 | 100.0 | 96.7 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_50 length_31448 cov_14.8458 | 270 | 1220 | sifB | 0/0 | 100.0 | 95.7 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_78 length_14674 cov_20.275 | 131 | 2323 | sinH | 0/0 | 100.0 | 95.6 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 21756 | 23813 | sipA/sspA | 0/0 | 100.0 | 98.3 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 17606 | 19387 | sipB/sspB | 0/0 | 100.0 | 99.4 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 19415 | 20644 | sipC/sspC | 0/0 | 100.0 | 99.5 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 20715 | 21737 | sipD | 3/11 | 99.0 | 90.3 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_93603 cov_16.4803 | 32533 | 34800 | slrP | 2/30 | 98.7 | 94.6 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_21 length_65339 cov_17.9413 | 45745 | 48093 | sopA | 0/0 | 100.0 | 97.2 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_87 length_10509 cov_16.2412 | 8158 | 9843 | sopB/sigD | 0/0 | 100.0 | 98.2 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_28 length_53692 cov_20.9044 | 12105 | 13058 | sopD | 0/0 | 100.0 | 97.7 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_46 length_34888 cov_15.0279 | 13902 | 14624 | sopE2 | 0/0 | 100.0 | 98.1 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 13255 | 14166 | spaO | 0/0 | 100.0 | 98.7 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 14156 | 14830 | spaP | 0/0 | 100.0 | 98.7 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 14856 | 15116 | spaQ | 0/0 | 100.0 | 99.6 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 15120 | 15911 | spaR | 0/0 | 100.0 | 99.0 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 15898 | 16968 | spaS | 0/0 | 100.0 | 98.5 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 20079 | 20480 | spiC/ssaB | 0/0 | 100.0 | 99.2 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_45 length_35322 cov_18.0817 | 24790 | 26421 | sptP | 0/0 | 100.0 | 97.6 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 18584 | 20077 | ssaC | 0/0 | 100.0 | 98.5 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 17392 | 18603 | ssaD | 0/0 | 100.0 | 98.2 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 17142 | 17384 | ssaE | 0/0 | 100.0 | 99.2 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 10788 | 11003 | ssaG | 0/0 | 100.0 | 100.0 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 10520 | 10747 | ssaH | 0/0 | 100.0 | 99.6 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 10260 | 10508 | ssaI | 0/0 | 100.0 | 98.8 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 9514 | 10263 | ssaJ | 0/0 | 100.0 | 98.1 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 8277 | 8951 | ssaK | 0/0 | 100.0 | 98.5 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 7295 | 8311 | ssaL | 0/0 | 100.0 | 99.0 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 6869 | 7237 | ssaM | 0/0 | 100.0 | 97.0 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 3548 | 4849 | ssaN | 0/0 | 100.0 | 98.8 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 3168 | 3545 | ssaO | 0/0 | 100.0 | 98.2 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 2813 | 3187 | ssaP | 0/0 | 100.0 | 99.5 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 1864 | 2832 | ssaQ | 0/0 | 100.0 | 98.1 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 1149 | 1796 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 886 | 1152 | ssaS | 0/0 | 100.0 | 99.2 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 106 | 885 | ssaT | 0/0 | 100.0 | 97.6 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 4839 | 6884 | ssaV | 0/0 | 100.0 | 99.0 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 15546 | 16019 | sscA | 0/0 | 100.0 | 97.5 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 12581 | 13015 | sscB | 0/0 | 100.0 | 99.5 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 16613 | 16939 | sseA | 0/0 | 100.0 | 99.7 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 16016 | 16606 | sseB | 0/0 | 100.0 | 97.1 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 14089 | 15543 | sseC | 0/0 | 100.0 | 97.2 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 13486 | 14073 | sseD | 0/0 | 100.0 | 96.9 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 13067 | 13483 | sseE | 0/0 | 100.0 | 99.3 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 11783 | 12565 | sseF | 0/0 | 100.0 | 98.5 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_68 length_20602 cov_15.0866 | 11097 | 11786 | sseG | 0/0 | 100.0 | 96.7 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_50 length_31448 cov_14.8458 | 29381 | 30607 | sseJ | 0/0 | 100.0 | 96.8 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_39 length_36904 cov_16.6877 | 14585 | 15217 | steA | 0/0 | 100.0 | 94.5 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_50 length_31448 cov_14.8458 | 27709 | 28110 | steB | 0/0 | 100.0 | 97.5 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_95 length_7171 cov_12.9265 | 51 | 1424 | steC | 0/0 | 100.0 | 95.0 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_15 length_153308 cov_19.2231 | 2391 | 3299 | avrA | 0/0 | 100.0 | 99.6 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 34762 | 35304 | bcfA | 0/0 | 100.0 | 99.1 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 33975 | 34661 | bcfB | 0/0 | 100.0 | 99.7 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 31349 | 33970 | bcfC | 0/0 | 100.0 | 99.2 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 30341 | 31348 | bcfD | 0/0 | 100.0 | 98.5 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 29795 | 30340 | bcfE | 0/0 | 100.0 | 98.5 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 29261 | 29779 | bcfF | 0/0 | 100.0 | 99.8 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_7 length_204883 cov_21.5508 | 28564 | 29295 | bcfG | 0/0 | 100.0 | 99.0 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 1041 | 1496 | csgA | 0/0 | 100.0 | 99.1 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 544 | 999 | csgB | 0/0 | 100.0 | 99.8 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 1558 | 1884 | csgC | 0/0 | 100.0 | 99.7 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 192 | 842 | csgD | 0/0 | 100.0 | 99.7 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 847 | 1242 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 1269 | 1685 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 1712 | 2545 | csgG | 0/0 | 100.0 | 99.5 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_311708 cov_19.7568 | 114309 | 115001 | fimC | 0/0 | 100.0 | 98.4 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_311708 cov_19.7568 | 115032 | 117644 | fimD | 0/0 | 100.0 | 98.8 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_311708 cov_19.7568 | 118676 | 119194 | fimF | 0/0 | 100.0 | 99.4 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_311708 cov_19.7568 | 117659 | 118666 | fimH | 0/0 | 100.0 | 98.2 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_311708 cov_19.7568 | 113732 | 114265 | fimI | 0/0 | 100.0 | 98.5 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 25193 | 27250 | invA | 0/0 | 100.0 | 99.2 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 24762 | 25169 | invB | 0/0 | 100.0 | 99.0 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 23470 | 24765 | invC | 0/0 | 100.0 | 99.2 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 27275 | 28393 | invE | 0/0 | 100.0 | 99.4 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 30075 | 30725 | invF | 0/0 | 100.0 | 98.9 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 28390 | 30078 | invG | 0/0 | 100.0 | 99.3 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 31183 | 31626 | invH | 0/0 | 100.0 | 98.9 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 23049 | 23492 | invI | 0/0 | 100.0 | 99.5 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 22039 | 23049 | invJ | 0/0 | 100.0 | 99.2 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_17 length_101920 cov_24.0111 | 48470 | 51196 | mgtB | 0/0 | 100.0 | 99.4 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_17 length_101920 cov_24.0111 | 47555 | 48250 | mgtC | 0/0 | 100.0 | 99.0 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_153308 cov_19.2231 | 82570 | 83466 | mig-14 | 0/0 | 100.0 | 97.8 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_17 length_101920 cov_24.0111 | 55110 | 57977 | misL | 0/0 | 100.0 | 99.2 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 1219 | 1818 | orgA | 0/0 | 100.0 | 100.0 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 582 | 1262 | orgB | 0/0 | 100.0 | 99.7 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 133 | 585 | orgC | 0/0 | 100.0 | 99.3 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 52697 | 53572 | pipB | 0/0 | 100.0 | 98.6 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_15 length_153308 cov_19.2231 | 85208 | 86260 | pipB2 | 0/0 | 100.0 | 98.3 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 3136 | 4314 | prgH | 0/0 | 100.0 | 99.6 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 2869 | 3111 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 2545 | 2850 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 1790 | 2548 | prgK | 0/0 | 100.0 | 99.9 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_360607 cov_17.3835 | 107423 | 113551 | shdA | 5/13 | 100.0 | 94.2 | NP_461448 | (shdA) AIDA autotransporter-like protein [ShdA (VF0398)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 17691 | 18188 | sicA | 0/0 | 100.0 | 99.2 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 10482 | 10874 | sicP | 0/0 | 100.0 | 100.0 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 79252 | 80262 | sifA | 0/0 | 100.0 | 99.8 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 459081 | 460031 | sifB | 0/0 | 100.0 | 97.2 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_360607 cov_17.3835 | 97419 | 99611 | sinH | 0/0 | 100.0 | 98.3 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 11472 | 13529 | sipA/sspA | 0/0 | 100.0 | 99.8 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 15907 | 17688 | sipB/sspB | 0/0 | 100.0 | 99.2 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 14650 | 15879 | sipC/sspC | 0/0 | 100.0 | 99.6 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 13548 | 14579 | sipD | 0/0 | 100.0 | 99.8 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_179196 cov_15.8455 | 57314 | 59581 | slrP | 2/30 | 98.7 | 96.9 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_395533 cov_15.2345 | 19754 | 22102 | sopA | 0/0 | 100.0 | 99.3 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 50106 | 51791 | sopB/sigD | 0/0 | 100.0 | 99.8 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 73106 | 74059 | sopD | 0/0 | 100.0 | 98.6 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_158383 cov_15.6154 | 129223 | 130182 | sopD2 | 0/0 | 100.0 | 99.7 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_395533 cov_15.2345 | 232459 | 233181 | sopE2 | 0/0 | 100.0 | 99.7 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 21128 | 22039 | spaO | 0/0 | 100.0 | 99.0 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 20464 | 21138 | spaP | 0/0 | 100.0 | 99.1 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 20178 | 20438 | spaQ | 0/0 | 100.0 | 100.0 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 19383 | 20174 | spaR | 0/0 | 100.0 | 99.8 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 18326 | 19396 | spaS | 0/0 | 100.0 | 100.0 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 247342 | 247741 | spiC/ssaB | 0/0 | 99.5 | 99.8 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_195208 cov_20.4639 | 8864 | 10495 | sptP | 0/0 | 100.0 | 99.8 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 247743 | 249236 | ssaC | 0/0 | 100.0 | 99.0 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 249217 | 250428 | ssaD | 0/0 | 100.0 | 99.2 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 250436 | 250678 | ssaE | 0/0 | 100.0 | 100.0 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 256877 | 257092 | ssaG | 0/0 | 100.0 | 100.0 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 257133 | 257360 | ssaH | 0/0 | 100.0 | 99.6 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 257372 | 257620 | ssaI | 0/0 | 100.0 | 100.0 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 257617 | 258366 | ssaJ | 0/0 | 100.0 | 99.3 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 258929 | 259603 | ssaK | 0/0 | 100.0 | 99.6 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 259569 | 260585 | ssaL | 0/0 | 100.0 | 99.1 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 260643 | 261011 | ssaM | 0/0 | 100.0 | 99.7 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 263031 | 264332 | ssaN | 0/0 | 100.0 | 99.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 264335 | 264712 | ssaO | 0/0 | 100.0 | 100.0 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 264693 | 265067 | ssaP | 0/0 | 100.0 | 99.7 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 265048 | 266016 | ssaQ | 0/0 | 100.0 | 98.5 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 266084 | 266731 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 266728 | 266994 | ssaS | 0/0 | 100.0 | 99.6 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 266995 | 267774 | ssaT | 0/0 | 100.0 | 98.7 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 267771 | 268829 | ssaU | 0/0 | 100.0 | 99.2 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 260996 | 263041 | ssaV | 0/0 | 100.0 | 99.5 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 251861 | 252334 | sscA | 0/0 | 100.0 | 98.9 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 254865 | 255299 | sscB | 0/0 | 100.0 | 100.0 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 250941 | 251267 | sseA | 0/0 | 100.0 | 99.7 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 251274 | 251864 | sseB | 0/0 | 100.0 | 100.0 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 252337 | 253791 | sseC | 0/0 | 100.0 | 98.1 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 253807 | 254394 | sseD | 0/0 | 100.0 | 97.5 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 254397 | 254813 | sseE | 0/0 | 100.0 | 98.8 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 255315 | 256097 | sseF | 0/0 | 100.0 | 99.4 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 256094 | 256783 | sseG | 0/0 | 100.0 | 99.3 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 488194 | 489420 | sseJ | 0/0 | 100.0 | 99.4 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_163065 cov_16.7552 | 56384 | 57430 | sseK2 | 0/0 | 100.0 | 100.0 | NP_461081 | (sseK2) type III secretion system effector SseK2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_360607 cov_17.3835 | 344329 | 345282 | sseL | 0/0 | 100.0 | 97.6 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_163065 cov_16.7552 | 156156 | 158522 | sspH2 | 0/0 | 100.0 | 99.7 | NP_461184 | (sspH2) type III secretion system effector SspH2 E3 ubiquitin ligase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 436424 | 437043 | steA | 2/15 | 97.8 | 96.2 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_558286 cov_14.6997 | 486522 | 486923 | steB | 0/0 | 100.0 | 99.8 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_31 length_12556 cov_10.5521 | 5349 | 6270 | tcpC | 2/2 | 99.8 | 95.9 | NP_754290 | (tcpC) Tir domain containing protein TcpC [TcpC (VF0413)] [Escherichia coli CFT073] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_6 length_226104 cov_17.4582 | 75187 | 76095 | avrA | 0/0 | 100.0 | 99.6 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 34762 | 35304 | bcfA | 0/0 | 100.0 | 99.1 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 33975 | 34661 | bcfB | 0/0 | 100.0 | 99.7 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 31349 | 33970 | bcfC | 0/0 | 100.0 | 99.2 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 30341 | 31348 | bcfD | 0/0 | 100.0 | 98.5 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 29795 | 30340 | bcfE | 0/0 | 100.0 | 98.5 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 29261 | 29779 | bcfF | 0/0 | 100.0 | 99.8 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_180289 cov_18.9663 | 28564 | 29295 | bcfG | 0/0 | 100.0 | 99.0 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 162244 | 162699 | csgA | 0/0 | 100.0 | 99.1 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 161747 | 162202 | csgB | 0/0 | 100.0 | 99.8 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 162761 | 163087 | csgC | 0/0 | 100.0 | 99.7 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 160342 | 160992 | csgD | 0/0 | 100.0 | 99.7 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 159942 | 160337 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 159499 | 159915 | csgF | 0/0 | 100.0 | 99.8 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 158639 | 159472 | csgG | 0/0 | 100.0 | 99.5 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_326616 cov_17.8675 | 211599 | 212291 | fimC | 0/0 | 100.0 | 98.4 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_326616 cov_17.8675 | 208956 | 211568 | fimD | 0/0 | 100.0 | 98.8 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_326616 cov_17.8675 | 207406 | 207924 | fimF | 0/0 | 100.0 | 99.4 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_326616 cov_17.8675 | 207934 | 208941 | fimH | 0/0 | 100.0 | 98.2 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_326616 cov_17.8675 | 212335 | 212868 | fimI | 0/0 | 100.0 | 98.5 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 45537 | 47594 | invA | 0/0 | 100.0 | 99.2 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 47618 | 48025 | invB | 0/0 | 100.0 | 99.0 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 48022 | 49317 | invC | 0/0 | 100.0 | 99.2 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 44394 | 45512 | invE | 0/0 | 100.0 | 99.4 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 42062 | 42712 | invF | 0/0 | 100.0 | 98.9 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 42709 | 44397 | invG | 0/0 | 100.0 | 99.3 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 41161 | 41604 | invH | 0/0 | 100.0 | 98.9 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 49295 | 49738 | invI | 0/0 | 100.0 | 99.5 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 49738 | 50748 | invJ | 0/0 | 100.0 | 99.2 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_18 length_101167 cov_21.2632 | 48251 | 50977 | mgtB | 0/0 | 100.0 | 99.4 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_18 length_101167 cov_21.2632 | 47336 | 48031 | mgtC | 0/0 | 100.0 | 99.0 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 155366 | 156262 | mig-14 | 0/0 | 100.0 | 97.8 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_18 length_101167 cov_21.2632 | 54891 | 57758 | misL | 0/0 | 100.0 | 99.2 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 70969 | 71568 | orgA | 0/0 | 100.0 | 100.0 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 71525 | 72205 | orgB | 0/0 | 100.0 | 99.7 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 72202 | 72654 | orgC | 0/0 | 100.0 | 99.3 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 107612 | 108487 | pipB | 0/0 | 100.0 | 98.6 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 158004 | 159056 | pipB2 | 0/0 | 100.0 | 98.3 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 68473 | 69651 | prgH | 0/0 | 100.0 | 99.6 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 69676 | 69918 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 69937 | 70242 | prgJ | 0/0 | 100.0 | 99.7 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 70239 | 70997 | prgK | 0/0 | 100.0 | 99.9 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_301022 cov_16.4564 | 187472 | 193600 | shdA | 5/13 | 100.0 | 94.2 | NP_461448 | (shdA) AIDA autotransporter-like protein [ShdA (VF0398)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 54599 | 55096 | sicA | 0/0 | 100.0 | 99.2 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 61913 | 62305 | sicP | 0/0 | 100.0 | 100.0 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 240455 | 241465 | sifA | 0/0 | 100.0 | 99.8 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 190025 | 190975 | sifB | 0/0 | 100.0 | 97.2 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_4 length_301022 cov_16.4564 | 201412 | 203604 | sinH | 0/0 | 100.0 | 98.3 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 59258 | 61315 | sipA/sspA | 0/0 | 100.0 | 99.8 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 55099 | 56880 | sipB/sspB | 0/0 | 100.0 | 99.2 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 56908 | 58137 | sipC/sspC | 0/0 | 100.0 | 99.6 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 58208 | 59239 | sipD | 0/0 | 100.0 | 99.8 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_197559 cov_14.6957 | 75709 | 77976 | slrP | 2/30 | 98.7 | 96.9 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_24 length_46382 cov_14.9347 | 17962 | 20310 | sopA | 0/0 | 100.0 | 99.3 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 109393 | 111078 | sopB/sigD | 0/0 | 100.0 | 99.8 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_17 length_122553 cov_18.3323 | 329 | 1282 | sopD | 0/0 | 100.0 | 98.6 | NP_461866 | (sopD) type III secretion system effector SopD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_408239 cov_14.1248 | 31002 | 31961 | sopD2 | 0/0 | 100.0 | 99.7 | NP_459947 | (sopD2) type III secretion system effector SopD2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_10 length_196382 cov_14.5915 | 126303 | 127025 | sopE2 | 0/0 | 100.0 | 99.7 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 50748 | 51659 | spaO | 0/0 | 100.0 | 99.0 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 51649 | 52323 | spaP | 0/0 | 100.0 | 99.1 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 52349 | 52609 | spaQ | 0/0 | 100.0 | 100.0 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 52613 | 53404 | spaR | 0/0 | 100.0 | 99.8 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 53391 | 54461 | spaS | 0/0 | 100.0 | 100.0 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 402408 | 402807 | spiC/ssaB | 0/0 | 99.5 | 99.8 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_6 length_226104 cov_17.4582 | 62292 | 63923 | sptP | 0/0 | 100.0 | 99.8 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 400913 | 402406 | ssaC | 0/0 | 100.0 | 99.0 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 399721 | 400932 | ssaD | 0/0 | 100.0 | 99.2 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 399471 | 399713 | ssaE | 0/0 | 100.0 | 100.0 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 393057 | 393272 | ssaG | 0/0 | 100.0 | 100.0 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 392789 | 393016 | ssaH | 0/0 | 100.0 | 99.6 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 392529 | 392777 | ssaI | 0/0 | 100.0 | 100.0 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 391783 | 392532 | ssaJ | 0/0 | 100.0 | 99.3 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 390546 | 391220 | ssaK | 0/0 | 100.0 | 99.6 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 389564 | 390580 | ssaL | 0/0 | 100.0 | 99.1 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 389138 | 389506 | ssaM | 0/0 | 100.0 | 99.7 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 385817 | 387118 | ssaN | 0/0 | 100.0 | 99.5 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 385437 | 385814 | ssaO | 0/0 | 100.0 | 100.0 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 385082 | 385456 | ssaP | 0/0 | 100.0 | 99.7 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 384133 | 385101 | ssaQ | 0/0 | 100.0 | 98.5 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 383418 | 384065 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 383155 | 383421 | ssaS | 0/0 | 100.0 | 99.6 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 382375 | 383154 | ssaT | 0/0 | 100.0 | 98.7 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 381320 | 382378 | ssaU | 0/0 | 100.0 | 99.2 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 387108 | 389153 | ssaV | 0/0 | 100.0 | 99.5 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 397815 | 398288 | sscA | 0/0 | 100.0 | 98.9 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 394850 | 395284 | sscB | 0/0 | 100.0 | 100.0 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 398882 | 399208 | sseA | 0/0 | 100.0 | 99.7 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 398285 | 398875 | sseB | 0/0 | 100.0 | 100.0 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 396358 | 397812 | sseC | 0/0 | 100.0 | 98.1 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 395755 | 396342 | sseD | 0/0 | 100.0 | 97.5 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 395336 | 395752 | sseE | 0/0 | 100.0 | 98.8 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 394052 | 394834 | sseF | 0/0 | 100.0 | 99.4 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 393366 | 394055 | sseG | 0/0 | 100.0 | 99.3 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 160636 | 161862 | sseJ | 0/0 | 100.0 | 99.4 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_163059 cov_15.5223 | 105417 | 106463 | sseK2 | 0/0 | 100.0 | 99.9 | NP_461081 | (sseK2) type III secretion system effector SseK2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_85728 cov_16.0105 | 43211 | 44164 | sseL | 0/0 | 100.0 | 97.6 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_13 length_163059 cov_15.5223 | 4325 | 6691 | sspH2 | 0/0 | 100.0 | 99.7 | NP_461184 | (sspH2) type III secretion system effector SspH2 E3 ubiquitin ligase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 213013 | 213632 | steA | 2/15 | 97.8 | 96.2 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 163133 | 163534 | steB | 0/0 | 100.0 | 99.8 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_2 length_403085 cov_13.5055 | 91596 | 92969 | steC | 0/0 | 100.0 | 99.3 | NP_460656 | (steC) type III secretion system effector SteC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_37 length_4319 cov_8.69323 | 849 | 1770 | tcpC | 2/2 | 99.8 | 95.9 | NP_754290 | (tcpC) Tir domain containing protein TcpC [TcpC (VF0413)] [Escherichia coli CFT073] |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_18 length_67170 cov_16.7038 | 63841 | 64748 | avrA | 1/1 | 99.9 | 99.8 | NP_461786 | (avrA) type III secretion system effector AvrA acetyltransferease [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 9435 | 9977 | bcfA | 0/0 | 100.0 | 99.8 | NP_459026 | (bcfA) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 8648 | 9334 | bcfB | 0/0 | 100.0 | 99.4 | NP_459027 | (bcfB) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 6022 | 8643 | bcfC | 0/0 | 100.0 | 99.0 | NP_459028 | (bcfC) fimbrial usher [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 5014 | 6021 | bcfD | 0/0 | 100.0 | 98.8 | NP_459029 | (bcfD) fimbrial adhesin protein [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 4468 | 5013 | bcfE | 0/0 | 100.0 | 98.0 | NP_459030 | (bcfE) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 3934 | 4452 | bcfF | 0/0 | 100.0 | 100.0 | NP_459031 | (bcfF) fimbrial subunit [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_20 length_60557 cov_16.6091 | 3237 | 3968 | bcfG | 0/0 | 100.0 | 98.9 | NP_459032 | (bcfG) fimbrial chaparone [bovine colonization factor (Bcf) (AI058)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 93875 | 94330 | csgA | 0/0 | 100.0 | 100.0 | NP_460115 | (csgA) curlin major subunit CsgA [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 93378 | 93833 | csgB | 0/0 | 100.0 | 100.0 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 94392 | 94718 | csgC | 0/0 | 100.0 | 100.0 | NP_460116 | (csgC) curli assembly protein CsgC [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 91973 | 92623 | csgD | 0/0 | 100.0 | 99.5 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 91573 | 91968 | csgE | 0/0 | 100.0 | 100.0 | NP_460112 | (csgE) curli production assembly/transport protein CsgE [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 91130 | 91546 | csgF | 0/0 | 100.0 | 100.0 | NP_460111 | (csgF) curli production assembly/transport protein CsgF [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 90270 | 91103 | csgG | 0/0 | 100.0 | 99.5 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_86138 cov_15.052 | 9357 | 10049 | fimC | 0/0 | 100.0 | 99.4 | NP_459540 | (fimC) chaperone protein FimC [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_86138 cov_15.052 | 6714 | 9326 | fimD | 0/0 | 100.0 | 98.7 | NP_459541 | (fimD) usher protein FimD [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_86138 cov_15.052 | 5164 | 5682 | fimF | 0/0 | 100.0 | 98.7 | NP_459543 | (fimF) type I fimbriae adaptor protein FimF [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_86138 cov_15.052 | 5692 | 6699 | fimH | 0/0 | 100.0 | 98.1 | NP_459542 | (fimH) type I fimbriae minor fimbrial subunit FimH adhesin [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_12 length_86138 cov_15.052 | 10093 | 10626 | fimI | 0/0 | 100.0 | 99.4 | NP_459539 | (fimI) fimbrial protein internal segment [Type 1 fimbriae (VF0102)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 5501 | 7558 | invA | 0/0 | 100.0 | 99.4 | NP_461817 | (invA) type III secretion system major export apparatus protein InvA [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 7582 | 7989 | invB | 0/0 | 100.0 | 99.0 | NP_461816 | (invB) type III secretion system protein InvB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 7986 | 9281 | invC | 0/0 | 100.0 | 98.8 | NP_461815 | (invC) type III secretion system ATPase InvC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 4358 | 5476 | invE | 0/0 | 100.0 | 99.9 | NP_461818 | (invE) type III secretion system gatekeeper invE [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 2026 | 2676 | invF | 0/0 | 100.0 | 99.8 | NP_461820 | (invF) type III secretion system regulatory protein InvF [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 2673 | 4361 | invG | 0/0 | 100.0 | 99.2 | NP_461819 | (invG) type III secretion system secretin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 1127 | 1570 | invH | 0/0 | 100.0 | 99.3 | NP_461821 | (invH) type III secretion system pilotin invG [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 9259 | 9702 | invI | 0/0 | 100.0 | 99.8 | NP_461814 | (invI) type III secretion system stalk protein InvI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 9702 | 10712 | invJ | 0/0 | 100.0 | 99.5 | NP_461813 | (invJ) type III secretion system needle length regulator InvJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_105 length_11850 cov_21.7432 | 11207 | 11743 | lpfA | 0/0 | 100.0 | 99.8 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_105 length_11850 cov_21.7432 | 10424 | 11122 | lpfB | 0/0 | 100.0 | 99.9 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_105 length_11850 cov_21.7432 | 7873 | 10401 | lpfC | 0/0 | 100.0 | 99.7 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_105 length_11850 cov_21.7432 | 6776 | 7855 | lpfD | 0/0 | 100.0 | 99.9 | NP_462538 | (lpfD) long polar fimbrial protein LpfD [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_105 length_11850 cov_21.7432 | 6243 | 6770 | lpfE | 0/0 | 100.0 | 99.8 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_94112 cov_18.4614 | 49389 | 52115 | mgtB | 0/0 | 100.0 | 99.2 | NP_462662 | (mgtB) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_94112 cov_18.4614 | 48474 | 49169 | mgtC | 0/0 | 100.0 | 99.0 | NP_462663 | (mgtC) Mg2+ transport protein [MgtBC (VF0106)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_84 length_19144 cov_15.2427 | 2840 | 3736 | mig-14 | 0/0 | 100.0 | 98.9 | NP_461708 | (mig-14) antimicrobial peptide resistance protein Mig-14 [Mig-14 (VF0395)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_9 length_94112 cov_18.4614 | 56030 | 58897 | misL | 0/0 | 100.0 | 99.2 | NP_462656 | (misL) putative autotransporter [MisL (VF0397)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 4446 | 5045 | orgA | 0/0 | 100.0 | 99.8 | NP_461791 | (orgA) type III secretion system accessory cytosolic protein OrgA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 5002 | 5682 | orgB | 0/0 | 100.0 | 99.8 | NP_461790 | (orgB) type III secretion system stator OrgB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 5679 | 6131 | orgC | 0/0 | 100.0 | 99.6 | NP_461789 | (orgC) type III secretion system effector OrgC [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 39244 | 40119 | pipB | 0/0 | 100.0 | 99.8 | NP_460061 | (pipB) type III secretion system effector PipB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_84 length_19144 cov_15.2427 | 47 | 1099 | pipB2 | 0/0 | 100.0 | 98.2 | NP_461706 | (pipB2) type III secretion system effector PipB3 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 1950 | 3128 | prgH | 0/0 | 100.0 | 99.2 | NP_461795 | (prgH) type III secretion system outer MS ring protein PrgH [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 3153 | 3395 | prgI | 0/0 | 100.0 | 100.0 | NP_461794 | (prgI) type III secretion system needle filament protein PrgI [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 3414 | 3719 | prgJ | 0/0 | 100.0 | 100.0 | NP_461793 | (prgJ) type III secretion system inner rod protein PrgJ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_119 length_6242 cov_14.1665 | 3716 | 4474 | prgK | 0/0 | 100.0 | 99.9 | NP_461792 | (prgK) type III secretion system inner MS ring protein PrgK [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_95 length_16729 cov_16.0467 | 9191 | 16498 | ratB | 2/6 | 100.0 | 98.7 | NP_461449 | (ratB) putative outer membrane protein [RatB (VF0399)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 14563 | 15060 | sicA | 0/0 | 100.0 | 99.8 | NP_461807 | (sicA) chaparone for SipC and SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 21877 | 22269 | sicP | 0/0 | 100.0 | 99.2 | NP_461800 | (sicP) chaparone for SptP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 172083 | 173093 | sifA | 0/0 | 100.0 | 100.0 | NP_460194 | (sifA) type III secretion system effector SifA N-terminal SKIP-binding domain C-terminal guanine nucleotide exchange factor activity [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_94 length_16950 cov_12.0072 | 15928 | 16878 | sifB | 0/0 | 100.0 | 99.5 | NP_460561 | (sifB) type III secretion system effector SifB [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_95 length_16729 cov_16.0467 | 96 | 2288 | sinH | 0/0 | 100.0 | 99.5 | NP_461452 | (sinH) intimin-like protein [SinH (VF0400)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 19222 | 21279 | sipA/sspA | 0/0 | 100.0 | 99.8 | NP_461803 | (sipA/sspA) type III secretion system effector SipA actin polymerizing activity [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 15063 | 16844 | sipB/sspB | 0/0 | 100.0 | 99.2 | NP_461806 | (sipB/sspB) type III secretion system hydrophilic translocator pore protein SipB [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 16872 | 18101 | sipC/sspC | 0/0 | 100.0 | 99.6 | NP_461805 | (sipC/sspC) type III secretion system hydrophilic translocator pore protein SipC [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 18172 | 19203 | sipD | 0/0 | 100.0 | 99.8 | NP_461804 | (sipD) type III secretion system hydrophilic translocator needle tip protein SipD [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_11 length_88493 cov_13.4831 | 28859 | 31126 | slrP | 2/30 | 98.7 | 96.8 | NP_459778 | (slrP) type III secretion system effector SlrP E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_34 length_45637 cov_15.5388 | 24884 | 27232 | sopA | 0/0 | 100.0 | 99.2 | NP_461011 | (sopA) type III secretion system effector SopA E3 ubiquitin ligase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_1 length_206809 cov_13.4863 | 41025 | 42710 | sopB/sigD | 0/0 | 100.0 | 99.8 | NP_460064 | (sopB/sigD) type III secretion system effector SopB phosphoinositide phosphatase [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_58 length_28598 cov_11.9214 | 12286 | 13008 | sopE2 | 0/0 | 100.0 | 99.9 | NP_460811 | (sopE2) type III secretion system effector SopE2 guanine nucleotide exchange factor [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 10712 | 11623 | spaO | 0/0 | 100.0 | 99.1 | NP_461812 | (spaO) type III secretion system C ring protein SpaO [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 11613 | 12287 | spaP | 0/0 | 100.0 | 99.8 | NP_461811 | (spaP) type III secretion system minor export apparatus protein SpaP [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 12313 | 12573 | spaQ | 0/0 | 100.0 | 100.0 | NP_461810 | (spaQ) type III secretion system minor export apparatus protein SpaQ [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 12577 | 13368 | spaR | 0/0 | 100.0 | 99.4 | NP_461809 | (spaR) type III secretion system minor export apparatus protein SpaR [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 13355 | 14425 | spaS | 0/0 | 100.0 | 99.8 | NP_461808 | (spaS) type III secretion system export apparatus switch protein SpaS [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 134529 | 134930 | spiC/ssaB | 0/0 | 100.0 | 100.0 | NP_460358 | (spiC/ssaB) type III secretion system protein SsaB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_67 length_26468 cov_15.5366 | 22256 | 23887 | sptP | 0/0 | 100.0 | 99.8 | NP_461799 | (sptP) type III secretion system effector SptP tyrosine phosphatase and GTPase-activating protein [TTSS(SPI-1 encode) (VF0116)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 133034 | 134527 | ssaC | 0/0 | 100.0 | 99.0 | NP_460359 | (ssaC) type III secretion system secretin SsaC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 131842 | 133053 | ssaD | 0/0 | 100.0 | 99.2 | NP_460360 | (ssaD) type III secretion system outer MS ring protein SsaD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 131592 | 131834 | ssaE | 0/0 | 100.0 | 100.0 | NP_460361 | (ssaE) chaperone for sseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 125178 | 125393 | ssaG | 0/0 | 100.0 | 100.0 | NP_460371 | (ssaG) type III secretion system needle filament protein SsaG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 124910 | 125137 | ssaH | 0/0 | 100.0 | 100.0 | NP_460372 | (ssaH) type III secretion system protein SsaH [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 124650 | 124898 | ssaI | 0/0 | 100.0 | 99.6 | NP_460373 | (ssaI) type III secretion system inner rod protein SsaI [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 123904 | 124653 | ssaJ | 0/0 | 100.0 | 99.2 | NP_460374 | (ssaJ) type III secretion system inner MS ring protein SsaJ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 122667 | 123341 | ssaK | 0/0 | 100.0 | 99.6 | NP_460376 | (ssaK) type III secretion system stator SsaK [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 121685 | 122701 | ssaL | 0/0 | 100.0 | 99.1 | NP_460377 | (ssaL) type III secretion system gatekeeper SsaL [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 121259 | 121627 | ssaM | 0/0 | 100.0 | 100.0 | NP_460378 | (ssaM) type III secretion system protein SsaM [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 117938 | 119239 | ssaN | 0/0 | 100.0 | 98.8 | NP_460380 | (ssaN) type III secretion system ATPase SsaN [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 117558 | 117935 | ssaO | 0/0 | 100.0 | 99.7 | NP_460381 | (ssaO) type III secretion system stalk protein SsaO [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 117203 | 117577 | ssaP | 0/0 | 100.0 | 99.5 | NP_460382 | (ssaP) type III secretion system needle length regulator SsaP [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 116254 | 117222 | ssaQ | 0/0 | 100.0 | 98.1 | NP_460383 | (ssaQ) type III secretion system C ring protein SsaQ [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 115539 | 116186 | ssaR | 0/0 | 100.0 | 98.9 | NP_460384 | (ssaR) type III secretion system minor export apparatus protein SsaR [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 115276 | 115542 | ssaS | 0/0 | 100.0 | 99.6 | NP_460385 | (ssaS) type III secretion system minor export apparatus protein SsaS [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 114496 | 115275 | ssaT | 0/0 | 100.0 | 98.5 | NP_460386 | (ssaT) type III secretion system minor export apparatus protein SsaT [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 113441 | 114499 | ssaU | 0/0 | 100.0 | 99.0 | NP_460387 | (ssaU) type III secretion system export apparatus switch protein SsaU [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 119229 | 121274 | ssaV | 0/0 | 100.0 | 99.8 | NP_460379 | (ssaV) type III secretion system major export apparatus protein ssaV [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 129936 | 130409 | sscA | 0/0 | 100.0 | 98.7 | NP_460364 | (sscA) chaperone for sseC [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 126971 | 127405 | sscB | 0/0 | 100.0 | 100.0 | NP_460368 | (sscB) chaperone for sseF [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 131003 | 131329 | sseA | 0/0 | 100.0 | 99.7 | NP_460362 | (sseA) chaperone for sseB and sseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 130406 | 130996 | sseB | 0/0 | 100.0 | 99.8 | NP_460363 | (sseB) type III secretion system effector SseB [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 128479 | 129933 | sseC | 0/0 | 100.0 | 99.0 | NP_460365 | (sseC) type III secretion system hydrophilic translocator pore protein SseC [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 127876 | 128463 | sseD | 0/0 | 100.0 | 100.0 | NP_460366 | (sseD) type III secretion system hydrophilic translocator pore protein SseD [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 127457 | 127873 | sseE | 0/0 | 100.0 | 100.0 | NP_460367 | (sseE) type III secretion system effector SseE [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 126173 | 126955 | sseF | 0/0 | 100.0 | 99.4 | NP_460369 | (sseF) type III secretion system effector SseF [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_3 length_135045 cov_13.5288 | 125487 | 126176 | sseG | 0/0 | 100.0 | 99.6 | NP_460370 | (sseG) type III secretion system effector SseG [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_111 length_7838 cov_10.2377 | 6169 | 7395 | sseJ | 0/0 | 100.0 | 99.4 | NP_460590 | (sseJ) type III secretion system effector SseJ glycerophospholipid:cholesterol acyltransferase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_14 length_77860 cov_15.3187 | 48441 | 49487 | sseK2 | 0/0 | 100.0 | 99.7 | NP_461081 | (sseK2) type III secretion system effector SseK2 [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_22 length_59219 cov_14.7691 | 42936 | 43889 | sseL | 0/0 | 100.0 | 97.7 | NP_461229 | (sseL) type III secretion system effector SseL deubiquitinase [SPI-2 encoded T3SS (SS021)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_101 length_13335 cov_11.1965 | 3486 | 5597 | sspH1 | 1/9 | 100.0 | 97.9 | AAD40326 | (sspH1) type III secretion system effector SspH1 E3 ubiquitin ligase [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s] |
| NODE_63 length_26799 cov_14.3557 | 2951 | 5317 | sspH2 | 0/0 | 100.0 | 99.7 | NP_461184 | (sspH2) type III secretion system effector SspH2 E3 ubiquitin ligase [TTSS(SPI-2 encode) (VF0321)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_79 length_21202 cov_12.2853 | 6157 | 6789 | steA | 0/0 | 100.0 | 98.4 | NP_460542 | (steA) type III secretion system effector SteA [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| NODE_62 length_27019 cov_12.7387 | 26366 | 26767 | steB | 0/0 | 100.0 | 100.0 | AAL20547 | (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
The search of plasmid replicons was performed by screening of the draft genome against PlasmidFinder database (ref) by using Abricate. Any hit with coverage and/or identity below 90% was removed. To see description of each field, click here.
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
## [1] "No plasmid replicon genes from Plasmidfinder database were found"
If using TORMES, please cite:
(…)
Also cite the software that are included in TORMES pipeline: